View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_11 (Length: 447)
Name: NF13138_low_11
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 699586 - 700000
Alignment:
| Q |
18 |
ccatgggcaccgagggtgctgccgacgatgattccaatgcaaaaccttcgcttaataacaagtacaaagggaagaagtctaaggctgctgcaaaatcaag |
117 |
Q |
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| T |
699586 |
ccatgggtgccgagggtgcttccgacgatgattccaatgccaaaccttcggttaataacaagtacaaagggaagaagtctaaggctgctgcaaaatcaag |
699685 |
T |
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| Q |
118 |
cggacaggcttatcagtgggagattttgaggagtgttggtatatcagatgaagagatttcaatgtttcaggatccttataagtggcttacttattttcca |
217 |
Q |
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| T |
699686 |
cggacaggcttatcagtgggagattttgaggagtgttggtatatcagatgaagagatttcaaagtttcaggatccttataagtggcttacttattttcca |
699785 |
T |
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| Q |
218 |
cctttggctgtagaggatcttaaggcatttggtttaggttgtgattggagaaggtcgtttattacgaccgatatgaacccttattttgattcttttgtta |
317 |
Q |
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| T |
699786 |
cctttggctgtagaggatcttaaggcatttggtttaggttgtgattggagaaggtcgtttattacgaccgatatgaacccttattttgattctttcgtta |
699885 |
T |
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| Q |
318 |
ggtggcaaatgaggaaattgaagtcattggggaaggttgttaaagatgttaggtatacaattttttcgcctttggatggacaaccgtgtgctgatcatga |
417 |
Q |
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| T |
699886 |
ggtggcaaatgaggaaattgaagtcattggggaaggttgttaaagatgttaggtatacaattttttcgcctttggatggacaaccgtgtgctgatcatga |
699985 |
T |
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| Q |
418 |
tagggctagtggtga |
432 |
Q |
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| T |
699986 |
tagggctagtggtga |
700000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 697499 - 697590
Alignment:
| Q |
23 |
ggcaccgagggtgctgccgacgatgattccaatgcaaaaccttcgcttaataacaagtacaaagggaagaagtctaaggctgctgcaaaatc |
114 |
Q |
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| T |
697499 |
ggcactgagggtgctgtcgtcgatgattccaacgcaaaccattagcttaataataaataagaagggaaaaagtgtaaggctgccgcaaaatc |
697590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 83 - 432
Target Start/End: Complemental strand, 23262472 - 23262123
Alignment:
| Q |
83 |
aaagggaagaagtctaaggctgctgcaaaatcaagcggacaggcttatcagtgggagattttgaggagtgttggtatatcagatgaagagatttcaatgt |
182 |
Q |
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| T |
23262472 |
aaagggaagaaatcaaaagttgctgcgaaatcgggtgggcaggtttatcaatgggagattatgaggagtgttggtatatctgatgctgagatttcggagt |
23262373 |
T |
|
| Q |
183 |
ttcaggatccttataagtggcttacttattttccacctttggctgtagaggatcttaaggcatttggtttaggttgtgattggagaaggtcgtttattac |
282 |
Q |
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| T |
23262372 |
ttcaggatccttataagtggttgtcttattttccgccgttggctgtcgatgatcttaaggcttttgggtttggttgtgattggagaaggtcgtttattac |
23262273 |
T |
|
| Q |
283 |
gaccgatatgaacccttattttgattcttttgttaggtggcaaatgaggaaattgaagtcattggggaaggttgttaaagatgttaggtatacaattttt |
382 |
Q |
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||| |||||||| |||||||||||| |||||||||||||||| |||||||| |||||| | | || ||||||||||| ||||||||||||||| ||||| |
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| T |
23262272 |
gacagatatgaatccttattttgatgcttttgttaggtggcatatgaggaagttgaaggcgtctggtaaggttgttaaggatgttaggtatacagttttt |
23262173 |
T |
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| Q |
383 |
tcgcctttggatggacaaccgtgtgctgatcatgatagggctagtggtga |
432 |
Q |
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| T |
23262172 |
tcgccattggatggacagccttgtgcggatcatgatagggctagtggtga |
23262123 |
T |
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