View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_12 (Length: 435)
Name: NF13138_low_12
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 53820171 - 53820598
Alignment:
| Q |
1 |
atcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaaccttctgaatttcttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820171 |
atcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttcaacctcattcaaaaccttctgaatttcttca |
53820270 |
T |
|
| Q |
101 |
atcccttccaactccttcttcacactcccaccttttctaaccattttcacccatgaaaatctcttcgaagcaaatgacattgctaccccgttgaaaaatg |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820271 |
atcccttctaactccttcttcacactcccaccttttctaaccattttcacccatgaaaatctcttcgaagcaaatgacattgctaccccgttgaaaaatg |
53820370 |
T |
|
| Q |
201 |
caacggatacagaaaccgttaaactcataacatcttcaatcacacgtccaagttcaacactatctgaaactgacaacaacgttggtgaagatgaataaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820371 |
caacggatacagaaaccgttaaactcataacatcttcaatcacacgtccaagttcaacactatctgaaactgacaacaacgttggtgaagatgaataaac |
53820470 |
T |
|
| Q |
301 |
aggaacatgcaattgttgttgttgtgtgacattcagattcacacaacggattccagaaactagtttctcaatttccttactcaacttcttcttagctttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820471 |
aggaacatgcaattgttgttgttgtgtgacattcagattcacacaacggattccagaaactagtttctcaatttccttactcaacttcttcttagctttt |
53820570 |
T |
|
| Q |
401 |
aaatatataactaactttgattcatctc |
428 |
Q |
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| T |
53820571 |
aaatatataactaactttgattcatctc |
53820598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 32337252 - 32337189
Alignment:
| Q |
5 |
cgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttc |
69 |
Q |
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||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32337252 |
cgcatcctcttcaaaacc-atctcacttcttcatcttctttctttttcaaattcccaatattttc |
32337189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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