View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13138_low_13 (Length: 423)
Name: NF13138_low_13
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_13 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 201 - 423
Target Start/End: Complemental strand, 41622791 - 41622568
Alignment:
| Q |
201 |
gttaactccttagaaatataatagtcttccattataaaaagaagaagcaattgaaaatcgatcatgattgtgtttatttaatccttttcctatgcattgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41622791 |
gttaactccttagaaatataatagtcttccattataaaaagaagaagcaattgaaaatcgatcatgattgtgttta-ttaatccttttcctatgcattgt |
41622693 |
T |
|
| Q |
301 |
taccgaatcctagtcctagt--aaataactgcttgatcaatgccggcaaatgcaatagataaagtnnnnnnnntgttgagtcaatttgcattaattagaa |
398 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41622692 |
taccgaatcctagtcctagtaaaaataactgcttgatcaatgccggcaaatgcaatagataaagtaaaaaaaatgttgagtcaatttgcattaattagaa |
41622593 |
T |
|
| Q |
399 |
gatgagataaattcaacaattctac |
423 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
41622592 |
gatgagataaattcaacaattctac |
41622568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 41622978 - 41622845
Alignment:
| Q |
14 |
ttctagcagtgacatatgaaagtcatgtgttaagaatcaagattaaggaatggcctacaatacaagacaggtcgttccccttgctccccttgtttggtgg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41622978 |
ttctagcagtgacatatgaaagtcatgtgttaagaatcaagattaaggaatggcctacaatacaagacaggtcgttccctttgctccccttgtttggtgg |
41622879 |
T |
|
| Q |
114 |
aattgcaaacaacctatacagtaagattctagct |
147 |
Q |
| |
|
||||||||||||||||| || ||||||||||||| |
|
|
| T |
41622878 |
aattgcaaacaacctatgcaataagattctagct |
41622845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University