View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_14 (Length: 420)
Name: NF13138_low_14
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 272 - 411
Target Start/End: Original strand, 13849522 - 13849663
Alignment:
| Q |
272 |
aactgttttaactaactaactaactagtataactttggtnnnnnnnn--gctaatcagtataactaacttttagatctaacaacttgctcccccgtacga |
369 |
Q |
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| T |
13849522 |
aactgttttaactaactaactaactagtataactttggtaaaaagaaaagctaatcagtataactaactgttagatctaacaacttgctcccccttacga |
13849621 |
T |
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| Q |
370 |
tgttatctactcgagcaaccatttatcaaataatagtataat |
411 |
Q |
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| T |
13849622 |
tgttatctactcgagcaatcatttctcaaataatagaataat |
13849663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 13849280 - 13849419
Alignment:
| Q |
7 |
tatacttttggagagcaaaaagacatagnnnnnnnggaaagtatactttcaaaatcacatcaagatgcaatcaactaagtaaagnnnnnnnntattatta |
106 |
Q |
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| T |
13849280 |
tatacatttggagagcaaaaagacatagtttttttggaaagtatactttcaaaatcacatcaagatgcaatcaactaagtaaagaaaaac---aatatta |
13849376 |
T |
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| Q |
107 |
tctaatagagcaaccactaactaatattaccattcatgataaa |
149 |
Q |
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| T |
13849377 |
tctaatagagcaaccactaactaatattaccattcttgataaa |
13849419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 224 - 380
Target Start/End: Original strand, 13868781 - 13868934
Alignment:
| Q |
224 |
ttacatcaagagtacacaaaacttgtatagccaatgaaaataacgactaactgttttaactaactaactaactagtataacttt-ggtnnnnnnnngcta |
322 |
Q |
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| T |
13868781 |
ttacatcaaaagtacacaagacttgtatagccaatgagaataacgactaac----taatgtaactaactaactagtataactttgggtaaaaaaataata |
13868876 |
T |
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| Q |
323 |
atcagtataactaacttttagatctaacaacttgctcccccgtacgatgttatctact |
380 |
Q |
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| T |
13868877 |
atcaatataactaacttttacatctaacaacttgctcccctataagatgttatctact |
13868934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 13868632 - 13868680
Alignment:
| Q |
102 |
tattatctaatagagcaaccactaac-taatattaccattcatgataaa |
149 |
Q |
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| T |
13868632 |
tattatctaatagagcaaccactaacgtaatattaccattcttgataaa |
13868680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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