View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13138_low_16 (Length: 414)
Name: NF13138_low_16
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 60 - 409
Target Start/End: Complemental strand, 6249523 - 6249181
Alignment:
| Q |
60 |
taagtatagtttttcttgccggaatcagggtcaccaatgcgataacaataagtataggctgtaagcaaagagaataaaatcatgacagcaggaccagcaa |
159 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6249523 |
taagtatattttctcttgccggaatcagggtcaccggtgcgataacaataagtataggctgtaaccaaagagaataaaatcatgacagcaggaccagcaa |
6249424 |
T |
|
| Q |
160 |
cccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaacttgcagtcaaaacacttcc-tgcat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
6249423 |
cccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaaattgcagtcaaaacacttccatgcat |
6249324 |
T |
|
| Q |
259 |
atcatttcaattaatcaagccagttataaaaatacattgattatatcatatttagtaacatatctaaaagaactatgatgtagtgaccaatttaacgatt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6249323 |
atcatttcaattaatcaagccagttataaaaatacattgattatatcatatttagtaacatatctaaaagaactatgatgtagtgaccaattt------- |
6249231 |
T |
|
| Q |
359 |
gatttagagacgagaatgttaaatcgatcgcttacattatccacctatgct |
409 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
6249230 |
-atttagagacaagaatgttaaatcgatcgcttacattatcaaccgatgct |
6249181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 39429145 - 39429285
Alignment:
| Q |
120 |
gtaagcaaagagaataaaatcatgacagcaggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctg |
219 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39429145 |
gtaaccaaagagaataaaatcatgacagcaggaccagcaatccaacctagctgagcaatggcccaagctaaagacaacacccctgatcctataacagctg |
39429244 |
T |
|
| Q |
220 |
ttattatgtgtgaacttgcagtcaaaacacttcctgcatat |
260 |
Q |
| |
|
|||| |||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
39429245 |
ttataatgtgtgagcttgcggtccaaacacttcctgcatat |
39429285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 44318035 - 44318137
Alignment:
| Q |
135 |
aaaatcatgacagcaggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaac |
234 |
Q |
| |
|
|||||||| |||| ||||||| |||||||| | ||||||||||||||| ||||| |||||||| |||||||||| || |||||||||||||| |||| |
|
|
| T |
44318035 |
aaaatcataacagaaggaccaattacccaacccaactgagctatggcccatgctaacgacaacactcctgatcctacaactgctgttattatgtgcgaac |
44318134 |
T |
|
| Q |
235 |
ttg |
237 |
Q |
| |
|
||| |
|
|
| T |
44318135 |
ttg |
44318137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 229
Target Start/End: Original strand, 44324917 - 44324998
Alignment:
| Q |
148 |
caggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtg |
229 |
Q |
| |
|
||||||||||||||||||| | ||||||||| | ||| ||||| || | |||||| |||||||||||||||||||||||||| |
|
|
| T |
44324917 |
caggaccagcaacccaacccatctgagctatagaccaggctaaggagagcaccccagatcctatcacagctgttattatgtg |
44324998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 40203689 - 40203583
Alignment:
| Q |
149 |
aggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaacttgcagtcaaaaca |
248 |
Q |
| |
|
||||||||||| ||| || || ||||| || |||||||||| ||||| ||| || || ||||||||||||||||||| |||| |||||||||| || || |
|
|
| T |
40203689 |
aggaccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacagctgttattacatgtgcacttgcagtccaagca |
40203590 |
T |
|
| Q |
249 |
cttcctg |
255 |
Q |
| |
|
|||||| |
|
|
| T |
40203589 |
gttcctg |
40203583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 40207857 - 40207739
Alignment:
| Q |
137 |
aatcatgacagcaggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaactt |
236 |
Q |
| |
|
|||||||||| ||||||||||| ||| || || ||||| || |||||||||| ||||| || || || |||| |||||||||||||| |||| |||| |
|
|
| T |
40207857 |
aatcatgacaataggaccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcactt |
40207758 |
T |
|
| Q |
237 |
gcagtcaaaacacttcctg |
255 |
Q |
| |
|
|||||| ||||| |||||| |
|
|
| T |
40207757 |
gcagtccaaacagttcctg |
40207739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 255
Target Start/End: Complemental strand, 40199538 - 40199420
Alignment:
| Q |
137 |
aatcatgacagcaggaccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaactt |
236 |
Q |
| |
|
|||||||||| ||||||||||| ||| || || ||||| || ||||||| || ||||| ||| || || |||| |||||||||||||| |||| |||| |
|
|
| T |
40199538 |
aatcatgacaataggaccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagaccctaccacagctgttattacatgtgcactt |
40199439 |
T |
|
| Q |
237 |
gcagtcaaaacacttcctg |
255 |
Q |
| |
|
|||||| || || |||||| |
|
|
| T |
40199438 |
gcagtccaagcagttcctg |
40199420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 243
Target Start/End: Original strand, 51719868 - 51719958
Alignment:
| Q |
153 |
ccagcaacccaacctagctgagctatggcccaagctaaagacaacacccctgatcctatcacagctgttattatgtgtgaacttgcagtca |
243 |
Q |
| |
|
||||||| |||||| | |||||||| ||||| || | || ||||| |||||||||||||| |||||||| || |||| ||||||||||| |
|
|
| T |
51719868 |
ccagcaatccaacccatttgagctattgcccatgcaagtgataacactcctgatcctatcactgctgttatgatatgtgcacttgcagtca |
51719958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University