View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13138_low_21 (Length: 371)
Name: NF13138_low_21
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_21 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 42981966 - 42982336
Alignment:
| Q |
1 |
atttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacctctgttccaattgcaacttcccaaacatcaacccaacaaaaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42981966 |
atttgtcctagacacaggtagcagtcttgtttggtccccatgtacctctcgctacctctgttccaattgcaacttcccaaacatcaacccaacaaaaatc |
42982065 |
T |
|
| Q |
101 |
ccagctttcatcccaagaaactcatcaaccaacaaaatcttaggctgcacaaaccccaaatgcggttatattttcggacccgacatcgaatctcgttgcc |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42982066 |
ccagttttcatcccaagaaactcatcaaccaacaaaatcttaggctgcacaaaccccaaatgcggttatattttcggacccgacatcgaatctcgttgcc |
42982165 |
T |
|
| Q |
201 |
aaggttgcaatccaaatacacgaaactgtaacaacatcacttgcccttcttatttagtgcaatacggtttaggtttaaccgctggtgtcttactattaga |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42982166 |
aaggttgcaatccaaatacacaaaactgtaacaacatcacttgcccttcttatttagtgcaatacggtttaggtttaaccgctggtgtcttactattaga |
42982265 |
T |
|
| Q |
301 |
taacctcaattttcctggcaaaaccgtagcaaattttctcgtaggttgttccattgtatctgacagacaac |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42982266 |
taacctcaattttcctggcaaaaccgtagcaaattttctcgtaggttgttccattgtatctgacagacaac |
42982336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 39870983 - 39871039
Alignment:
| Q |
1 |
atttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacct |
57 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
39870983 |
atttgtcttagacacatgtagcagccttgtttggtccccatgttcctctcgcaacct |
39871039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3026354 - 3026410
Alignment:
| Q |
1 |
atttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacct |
57 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| |||||||| |||| |
|
|
| T |
3026354 |
atttgtcctagacacatagagtagccttgtttggtccccatgttcctctcgcaacct |
3026410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35381913 - 35381969
Alignment:
| Q |
1 |
atttgtcctagacacaggtagcagccttgtttggtccccatgtacctctcgctacct |
57 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || |||| ||| |||| |
|
|
| T |
35381913 |
atttgtcctagacacatgtagcagccttgtttggtccccaagttcctcccgcaacct |
35381969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University