View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_22 (Length: 371)
Name: NF13138_low_22
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 140 - 357
Target Start/End: Original strand, 47980962 - 47981179
Alignment:
| Q |
140 |
agttcttaagtattcacaaagtgttataatcattctatctctttgaccaagttataataattttccacacgttcctgaacctcttccacatgcacctctt |
239 |
Q |
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| T |
47980962 |
agttcttaagtattcacaaagtgttataatcattctatctctttgaccaagttataataattttccacacgttcctgaacctcttccacatgcacctctt |
47981061 |
T |
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| Q |
240 |
ttgtttgatatgaatggtctagtctttcatgtgaacgtaactccacctcaacttgaacactttgtgttggtatttcaccaacatagccattttgatttca |
339 |
Q |
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| T |
47981062 |
ttgtttgatttgaatggtctagtctttcatgtgaacgtaactccacctcaacttgaacactctgtgttggtatttcaccaacatagccattttgatttca |
47981161 |
T |
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| Q |
340 |
tcaaacactatacatctt |
357 |
Q |
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| T |
47981162 |
tcaaacactatacatctt |
47981179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 47980835 - 47980884
Alignment:
| Q |
13 |
tcatcatagtaaaacctataagaccgaaacactataattgttggtgttat |
62 |
Q |
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||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
47980835 |
tcatcatagtaaaacctttaagaccgaagcactataattgttggtgttat |
47980884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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