View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_27 (Length: 300)
Name: NF13138_low_27
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 124 - 283
Target Start/End: Original strand, 1293416 - 1293574
Alignment:
| Q |
124 |
gatatgaatcataaaattgatatgaatgaattgttggataaatcatgaaatttcaacatatgatattgtattaaatttggctatacaaaacttctaacat |
223 |
Q |
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| T |
1293416 |
gatatgaatcataaaattgatatgaataaatcgttggataaatcatgaaatttaaacatttgatattgtattaaatttgactatacaaaacttctaa-ac |
1293514 |
T |
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| Q |
224 |
atgtataaacattggatcacctcgaggatgtattattcctaactcttaagactaactttt |
283 |
Q |
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| T |
1293515 |
atgtataaacattggatcacctcgaggatgtattattcctaactcttaagactaactttt |
1293574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 108
Target Start/End: Original strand, 1292139 - 1292246
Alignment:
| Q |
3 |
tataagtaaatttgttaaagagtataattggaagtgaaaaaatcagtctataatcatannnnnnnnnnatatatagtatagatataaaaatag--ttaga |
100 |
Q |
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| T |
1292139 |
tataagtaaatttgttaaagagtataattggaagtgaaaaaatcagtctataatcatatattttctttatatacagtatagatataaaaatagatttaga |
1292238 |
T |
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| Q |
101 |
taagaatc |
108 |
Q |
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| T |
1292239 |
taagaatc |
1292246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 40038946 - 40038987
Alignment:
| Q |
3 |
tataagtaaatttgttaaagagtataattggaagtgaaaaaa |
44 |
Q |
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| T |
40038946 |
tatatgtaaatttgtttaagtgtataattggaagtgaaaaaa |
40038987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 33201241 - 33201204
Alignment:
| Q |
10 |
aaatttgttaaagagtataattggaagtgaaaaaatca |
47 |
Q |
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| T |
33201241 |
aaatttgttaaaggatataattggaagtgaaaaaatca |
33201204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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