View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_3 (Length: 667)
Name: NF13138_low_3
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_3 |
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| [»] scaffold0214 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 9 - 644
Target Start/End: Original strand, 37486885 - 37487523
Alignment:
| Q |
9 |
gagatgaataagccaacattgtttctaagaagtcctccaaaaccaacgcgttgaggagtaccaaggcaactctcgtccacattgagaatgtagcaagaat |
108 |
Q |
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| T |
37486885 |
gagatgaataaggcaacattgtttctaagaagtcctcaaaaaccgacgcgttgaggagtaccaaggcaactcttgtccacattaagaatgtagcaagaat |
37486984 |
T |
|
| Q |
109 |
ggttgaggcaattgcacttgacaactcggtccaccgcagcagaagcaggggagagctggagagatgtctcgataacataaactgaatcctgaatgttgaa |
208 |
Q |
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| T |
37486985 |
ggttgaggcaattccacttgacaactcggtccaccgcagcagaagcaggggagagcttgagagatgtctcgataacataaactgaatcatgaatgttgaa |
37487084 |
T |
|
| Q |
209 |
agaaatgcgatgaagagaccaaaccttattactgaaaacattgcggtgtctccaaatccatcaaaggccacaacaaagaggagagagtcggtactcacga |
308 |
Q |
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| T |
37487085 |
agaaatgcgatgaagagaccaaaccttattactg-aaacattgcggtgtctccaaacccaccaaaggtcacaacaaagaggagagagtcggtactcacga |
37487183 |
T |
|
| Q |
309 |
gaccatcttttagccag--acataagaagcagattccgtgaagaagtcaacaaaggtgaagccaatgtggatatttgt--nnnnnnnnnnnnnnnnnggc |
404 |
Q |
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| T |
37487184 |
gaccatcttttagccagacacataagaagcagattccacgaagaagtcaccaaaggtgaagccaatgtggatatttgtaataaaaaaaaaaaaaaaaggc |
37487283 |
T |
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| Q |
405 |
ctatgtaggatacataatttaatttaactactgaaaaacaattttaattgttaattttaaacaaatacaattgttaattaattacgagaaaggaaacaac |
504 |
Q |
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| T |
37487284 |
ctatgtaggatacataatttaatttaactactgaaaaacaattttaattgttaattttaaacaaaaataattgttaattaattacgagaaaggaaacaac |
37487383 |
T |
|
| Q |
505 |
cgaaaaaagcgatattataattcgggttagggtttgctcaaattgaacttcaagatgggaaccaaaaagaaatcagcgaagaagatagagctcgaagaag |
604 |
Q |
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| T |
37487384 |
cgaaaaaagcgatattataattcgggttagggtttgctcaaattgaacttcaagatgggaaccaaaaagaaatcagcgaagaagatagagctcgaagaag |
37487483 |
T |
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| Q |
605 |
acgagctcaatgcttcaaattcttcagtcacagcaatcag |
644 |
Q |
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| T |
37487484 |
acgagctcaatgcttcaaattcttcagtcacagcaatcag |
37487523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 24013322 - 24013157
Alignment:
| Q |
69 |
ccaaggcaactctcgtccacattgagaatgtagcaagaatggttgaggcaattgcacttgacaactcggtccaccgcagcagaagcaggggagagctgga |
168 |
Q |
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|||||||||||| |||||||||||| |||| |||||||||| |||| |||||| ||||| ||||| || || | |||||| | ||||| |||| | || |
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| T |
24013322 |
ccaaggcaactcccgtccacattgataatgaagcaagaatgattgaagcaattccactttacaacccgttcttcagcagcatcaacagggaagaggttga |
24013223 |
T |
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| Q |
169 |
gagatgtctcgataacataaactgaatcctgaatgttgaaagaaatgcgatgaagagaccaaacct |
234 |
Q |
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| T |
24013222 |
gagatgtctggataacattaactgtatcttgaatattgaaagaaatatggtgaagcgaccaaacct |
24013157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 61 - 234
Target Start/End: Complemental strand, 26792300 - 26792127
Alignment:
| Q |
61 |
gaggagtaccaaggcaactctcgtccacattgagaatgtagcaagaatggttgaggcaattgcacttgacaactcggtccaccgcagcagaagcagggga |
160 |
Q |
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|||||| ||||||||||||| | |||||||||| |||| |||||||||| |||| |||||| ||||| ||||| ||||| | ||||||| | ||||| | |
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| T |
26792300 |
gaggagaaccaaggcaactcccatccacattgataatgaagcaagaatgattgaagcaattccactttacaacccggtcttcagcagcagcaacagggaa |
26792201 |
T |
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| Q |
161 |
gagctggagagatgtctcgataacataaactgaatcctgaatgttgaaagaaatgcgatgaagagaccaaacct |
234 |
Q |
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| T |
26792200 |
gaggttgaaagatgtctggataatattaaccgtatcttgaattttgaaagaaatatggtgaagcgaccaaacct |
26792127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 69 - 234
Target Start/End: Complemental strand, 10776 - 10611
Alignment:
| Q |
69 |
ccaaggcaactctcgtccacattgagaatgtagcaagaatggttgaggcaattgcacttgacaactcggtccaccgcagcagaagcaggggagagctgga |
168 |
Q |
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|||||||||||| |||| ||||||| |||| |||||||||| |||| |||||| ||| | ||||| || || | ||||||| | ||||| ||| | || |
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| T |
10776 |
ccaaggcaactcccgtcgacattgataatgaagcaagaatgattgaagcaattccaccttacaacccgttcttcagcagcagcaacagggtggaggttga |
10677 |
T |
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| Q |
169 |
gagatgtctcgataacataaactgaatcctgaatgttgaaagaaatgcgatgaagagaccaaacct |
234 |
Q |
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| T |
10676 |
gagatgtctggatcacattaactgtatcttgaatattgaaagaaatatggtgaagtgaccaaacct |
10611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 53003361 - 53003415
Alignment:
| Q |
60 |
tgaggagtaccaaggcaactctcgtccacattgagaatgtagcaagaatggttga |
114 |
Q |
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||||||| ||||||||||||| |||||||||||| |||| |||||||||| |||| |
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| T |
53003361 |
tgaggagaaccaaggcaactcccgtccacattgataatgaagcaagaatgattga |
53003415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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