View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13138_low_31 (Length: 284)

Name: NF13138_low_31
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13138_low_31
NF13138_low_31
[»] scaffold0054 (1 HSPs)
scaffold0054 (1-268)||(43745-44012)
[»] chr6 (2 HSPs)
chr6 (46-132)||(24416432-24416519)
chr6 (207-266)||(12155608-12155667)
[»] chr7 (2 HSPs)
chr7 (152-250)||(45627659-45627756)
chr7 (152-250)||(30783839-30783936)
[»] chr5 (2 HSPs)
chr5 (152-218)||(31183566-31183630)
chr5 (152-207)||(22070172-22070228)
[»] chr4 (1 HSPs)
chr4 (152-196)||(3499072-3499116)
[»] scaffold0209 (1 HSPs)
scaffold0209 (152-207)||(15215-15270)
[»] scaffold0028 (1 HSPs)
scaffold0028 (152-207)||(20741-20796)
[»] chr2 (5 HSPs)
chr2 (152-213)||(30054041-30054102)
chr2 (152-213)||(30145084-30145145)
chr2 (177-219)||(17708946-17708988)
chr2 (230-267)||(30054038-30054075)
chr2 (230-267)||(30145081-30145118)
[»] scaffold0264 (1 HSPs)
scaffold0264 (230-268)||(24087-24125)


Alignment Details
Target: scaffold0054 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 43745 - 44012
Alignment:
Q  1 aaagattgtctatctgtagctactagctactgatttggttttaaagaagctttccgtaactggactcatgtgattctgttgattagaatcagatgaagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  43745 aaagattgtctatctgtagctactagctactgatttggttttaaagaagctttccgtaactggattcatgtgattctattgattagaatcagatgaagtt 43844  T
Q  101 caggcaataccaatttatgaaagtctgtcatgactcatgagccaatttatgaaaccctaaaacccaattttattcctcaatctcactttccctcaatctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43845 caggcaataccaatttatgaaagtctgtcatgactcatgagccaatttatgaaaccctaaaacccaattttattcctcaatctcactttccctcaatctg 43944  T
Q  201 aaacctaaatctccaccacactcacccataatctcacttccccccaaattaaaacctaaatctctacc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43945 aaacctaaatctccaccacactcacccataatctcacttccccccaaattaaaacctaaatctctacc 44012  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 24416432 - 24416519
Alignment:
Q  46 gaagctttccgtaactggactcatgtgattctgttgattagaatcagatgaagttcaggc-aataccaatttatgaaagtctgtcatg 132  Q
    ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||  | ||||||||||||| |||||||||||||    
T  24416432 gaagctttccgtaactggatttatgtgattctgttgattagaatcatatgaagttcaaccaaataccaatttataaaagtctgtcatg 24416519  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 266
Target Start/End: Complemental strand, 12155667 - 12155608
Alignment:
Q  207 aaatctccaccacactcacccataatctcacttccccccaaattaaaacctaaatctcta 266  Q
    ||||||||||||| || ||||| |||||||||| |||||| ||| |||||| ||||||||    
T  12155667 aaatctccaccactcttacccacaatctcactttcccccagattgaaaccttaatctcta 12155608  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 45627659 - 45627756
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaatctgaaacctaaatctccaccacactcacccataatctcacttccccccaaatt 250  Q
    ||||||||||| |||||||||||| ||||| ||| |||||| |||||||| |||||||| |||||||| |||||||| |||| ||||| ||||||||||    
T  45627659 aaaccctaaaatccaattttattcatcaatttcattttcccccaatctgacacctaaatttccaccactctcacccacaatc-cactttcccccaaatt 45627756  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 250
Target Start/End: Original strand, 30783839 - 30783936
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaatctgaaacctaaatctccaccacactcacccataatctcacttccccccaaatt 250  Q
    ||||||||||| |||||||||||| ||||| |||||||| | |||||| | |||||||| |||||| | |||||||| |||| ||||| ||||||||||    
T  30783839 aaaccctaaaatccaattttattcatcaatttcactttcgcccaatctcacacctaaatttccacctctctcacccacaatc-cactttcccccaaatt 30783936  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 31183566 - 31183630
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaatctgaaacctaaatctccacca 218  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  31183566 aaaccctaaaacccaattttatt-ctcaatctcactttccc-caatctgaaacctaaatctctacca 31183630  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 22070228 - 22070172
Alignment:
Q  152 aaaccctaaaacccaattttattcct-caatctcactttccctcaatctgaaaccta 207  Q
    ||||||||||||| |||||| ||  | ||||||||||||| ||||||||||||||||    
T  22070228 aaaccctaaaacctaatttttttttttcaatctcactttctctcaatctgaaaccta 22070172  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Complemental strand, 3499116 - 3499072
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaa 196  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  3499116 aaaccctaaaaccccattttattcctcaatctcactttccctcaa 3499072  T

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Target: scaffold0209 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 15215 - 15270
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaatctgaaaccta 207  Q
    ||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||    
T  15215 aaaccctaaaacctaatttttttcttcaatctcactttctctcaatctgaaaccta 15270  T

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Target: scaffold0028 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 20796 - 20741
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaatctgaaaccta 207  Q
    ||||||||||||| |||||| ||| |||||||||||||| ||||||||||||||||    
T  20796 aaaccctaaaacctaatttttttcttcaatctcactttctctcaatctgaaaccta 20741  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 30054102 - 30054041
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaatctgaaacctaaatctc 213  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||  | |||||||||||||    
T  30054102 aaaccctaaaacccaattttattccacaatctaactttcccccaaattaaaacctaaatctc 30054041  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 30145145 - 30145084
Alignment:
Q  152 aaaccctaaaacccaattttattcctcaatctcactttccctcaatctgaaacctaaatctc 213  Q
    ||||||||||||||||||||||||| |||||| |||||||| |||  | |||||||||||||    
T  30145145 aaaccctaaaacccaattttattccacaatctaactttcccccaaattaaaacctaaatctc 30145084  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 219
Target Start/End: Original strand, 17708946 - 17708988
Alignment:
Q  177 tcaatctcactttccctcaatctgaaacctaaatctccaccac 219  Q
    |||||||||||||||| |||| ||||||||||||||| |||||    
T  17708946 tcaatctcactttcccccaatttgaaacctaaatctctaccac 17708988  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 30054075 - 30054038
Alignment:
Q  230 aatctcacttccccccaaattaaaacctaaatctctac 267  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  30054075 aatctaactttcccccaaattaaaacctaaatctctac 30054038  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 30145118 - 30145081
Alignment:
Q  230 aatctcacttccccccaaattaaaacctaaatctctac 267  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  30145118 aatctaactttcccccaaattaaaacctaaatctctac 30145081  T

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Target: scaffold0264 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 24087 - 24125
Alignment:
Q  230 aatctcacttccccccaaattaaaacctaaatctctacc 268  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  24087 aatctcacttcctcccaaattgaaacctaaatctctacc 24125  T

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