View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_4 (Length: 564)
Name: NF13138_low_4
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_4 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 522; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 19 - 548
Target Start/End: Original strand, 6915165 - 6915694
Alignment:
| Q |
19 |
ataaccggatgccttggccgaatgaactagtataccagtaggttgatgacctctatttttcctacaatgttactcatctttcagaaccaacacacaaaat |
118 |
Q |
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| T |
6915165 |
ataaccggatgccttggccgaatgaacaagtataccagtaggttgatgacctctatttttcctacaatgttactcatctttcagaaccaacacacaaaat |
6915264 |
T |
|
| Q |
119 |
ggtagaaaatgaagactacaataccaaattcaaaacacattatcagaccacaacttacatgcaacgactgcagttgcagatgcctttgcactttggacaa |
218 |
Q |
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| T |
6915265 |
ggtagaaaatgaagactacaataccaaattcaaaacacattatcagaccacaacttacatgcaacgactgcagttgcagatgcctttgcactttggacaa |
6915364 |
T |
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| Q |
219 |
ttccaatcattcaatagatctacctcttccgccttttccccatatctaaattcaacacaaatcatcagcattcaaaaaacacaataaattagtctactgt |
318 |
Q |
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| T |
6915365 |
ttccaatcattcaatagatctacctcttccgccttttccccatatctaaattcaacacaaatcatcagcattcaaaaaacacaataaattagtctactgt |
6915464 |
T |
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| Q |
319 |
tatactcttaataaaatagaattagtctatagataaaaccaaattaaaaaacgggggaaccaaacctgttcaagaggcatttgtggcagaacctgatgac |
418 |
Q |
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| T |
6915465 |
tatactcttaataaaatagaattagtctatagataaaaccaaattaaaaaaagggggaaccaaacctgttcaagaggcatttgtggcagaacctgatgac |
6915564 |
T |
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| Q |
419 |
acaaggcttcccacctcttggattcttacaagcagcagaaaaatccattgttttttgccgacacttcaatgtggaaaaccaagtaaacaaatgtgttagc |
518 |
Q |
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| T |
6915565 |
acaaggcttcccacctcttggattcttacaagcagcagaaaaatccattgttttttgccgacacttcaatgtggaaaaccaagtaaacaaatgtgttagc |
6915664 |
T |
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| Q |
519 |
atcaaaacaggaaatcaaataccaacacag |
548 |
Q |
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| T |
6915665 |
atcaaaacaggaaatcaaataccaacacag |
6915694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 315
Target Start/End: Complemental strand, 3795947 - 3795850
Alignment:
| Q |
222 |
caatcattcaatagatctacctcttccgccttttccccatatctaaattcaacaca----aatcatcagcat-tcaaaaaacacaataaattagtctac |
315 |
Q |
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| T |
3795947 |
caatcattcaatagatctatctcttctaccttttttcg-tatctaaattcaacacacataaatcatgagcatataaaaaaacacaataaattagtctac |
3795850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 3801563 - 3801518
Alignment:
| Q |
210 |
tttggacaattccaatcattcaatagatctacctcttccgcctttt |
255 |
Q |
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| T |
3801563 |
tttggacaattccaatcattcaagagatctatctcttctgcctttt |
3801518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 338
Target Start/End: Complemental strand, 3812554 - 3812472
Alignment:
| Q |
261 |
tatctaaattcaacaca----aatcatcagcat-tcaaaaaacacaataaattagtctactgttatactcttaataaaataga |
338 |
Q |
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| T |
3812554 |
tatctaaattcaacacacgaaaatcattagcatataaaaaaacacaataaattagtctaccttcaaactcttgataaaataga |
3812472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 3796056 - 3796000
Alignment:
| Q |
95 |
tctttcagaaccaacacacaaaatggtagaaaatgaagactacaataccaaattcaa |
151 |
Q |
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| T |
3796056 |
tctttcggaactaacacgcaaaatggtacaaaatgaagactacgacaccaaactcaa |
3796000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 21 - 496
Target Start/End: Complemental strand, 153109 - 152624
Alignment:
| Q |
21 |
aaccggatgccttggccgaatgaactagtataccagtaggttgatgacctctatttttcctacaatgttactcatctttcagaaccaacacacaaaatgg |
120 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||| | |||||| |||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
153109 |
aacccgatgccttggccgaatgaactagtataccagttggttgttcacctctttttttcctacaaggttactcgtctttcagaaccaacacacaaaatgg |
153010 |
T |
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| Q |
121 |
tagaaaatgaagactacaataccaaattcaaaacacattatcagaccacaacttacatgcaacgactgcagttgcagatgcctttgcactttggacaatt |
220 |
Q |
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| T |
153009 |
tacaaaatgaaaaccacaacaccaaactcaaaatggatattgaaaccacaacttacatgcaaaaactgcagttgcaaatgcctctgcactttgggcacat |
152910 |
T |
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| Q |
221 |
ccaatcattcaatagatctacctcttccgccttttccccatatctaaattca--acacaaatcatcagcat---tcaaaaaacacaataaattagtctac |
315 |
Q |
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| T |
152909 |
ccaatcattcaatagttctacctcttctgccttttcaccatatctaaattcaacacacatatcatcggcataagaaaaaacacacaataaattaatctac |
152810 |
T |
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| Q |
316 |
tgttatactcttaataaaatagaattagtctatagat-aaaaccaaatt----aaaaaacgggggaaccaaacctgttcaagaggcatttgtggcagaac |
410 |
Q |
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|| |||||||||||||||||||| | ||| | || ||||| ||||| | |||| | ||||||||||||||||||||||| |||||||||||| |
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| T |
152809 |
atttgtactcttaataaaatagaataattctgaaaataaaaactaaattataaataaaaaagatgaaccaaacctgttcaagaggcacttgtggcagaac |
152710 |
T |
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| Q |
411 |
ctgatgacacaaggcttcccacctcttggattcttacaagcagcagaaaaatccattgttttttgccgacacttcaatgtggaaaa |
496 |
Q |
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|| || |||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |
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| T |
152709 |
ctaatttggcaaggcttcccagttcttggattcttacaagcagcagaaaagtcccttgttttttgccggcacttcaatgtggaaaa |
152624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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