View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_41 (Length: 236)
Name: NF13138_low_41
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12945419 - 12945632
Alignment:
| Q |
1 |
cgagagtcgcaggaacaccaattgttcttataatttgttctcttgtatttgcaaagttatcaatttgtgcgtcgaagtttattcgaccaccctattaata |
100 |
Q |
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| T |
12945419 |
cgagagtcgcaggaacaccaattgttctgataatttgttctcttgtatttgcaaagttatcaatttgtgcatcgaagtttattcgaccacccta------ |
12945512 |
T |
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| Q |
101 |
acatgaaagattcaacctatcaccagaattgaaggaaaaactatataaaaatattggaacaaaaacttacaaagagaaatcctgtcttattgaggattcc |
200 |
Q |
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| T |
12945513 |
-catgaaagattcaacctattaccataattaaaggaaaaactataaagcaatattggaacaaaaacttacaaagagaaatcctgtcttattgaggattcc |
12945611 |
T |
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| Q |
201 |
gcctccacccgaggcataatt |
221 |
Q |
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||||||||||||||||||||| |
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| T |
12945612 |
gcctccacccgaggcataatt |
12945632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 12940216 - 12940310
Alignment:
| Q |
13 |
gaacaccaattgttcttataatttgttctcttgtatttgcaaagttatcaatttgtgcgtcgaagtttattcgaccaccctattaataacatgaa |
107 |
Q |
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||||||||||| | || || || | ||||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||||||| ||||||| |
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| T |
12940216 |
gaacaccaattttgctaatgatatcttctcttgtatttgcaaagttatcaatttgtgcatcaaagttgattcgaccaacctattaatcacatgaa |
12940310 |
T |
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