View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13138_low_43 (Length: 230)
Name: NF13138_low_43
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_43 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 3318799 - 3319028
Alignment:
| Q |
1 |
taggttaaagcattaggaagatgccaatttattgaaagggtggagaggtggttacaaaaagtcagagatttagcggtacaaaattgcatgtgaaaaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3318799 |
taggttaaagcattaggaagatgccaatttattgaaagggtggagaggtggttacaaaaagtcagagatttagcggtacaaaattgcatgtgaaaaatcc |
3318898 |
T |
|
| Q |
101 |
acccnnnnnnnntattgcatgtgaaaatcatagcggtgtgagctaaaaatggagaaaaggaaaagtaaatggtaaagagaatttggaatgatgctagaaa |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3318899 |
acccaaaaaaaatattgcatgtgaaaatcatagcggtgtgagctaaaaatggagaaaaggaaaagtaaatggtaaagtgaatttggaatgatgctagaaa |
3318998 |
T |
|
| Q |
201 |
tataataatactttgaagtaatgctctgaa |
230 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
3318999 |
tataagaatactttgaagtaatgctctgaa |
3319028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 3311256 - 3311340
Alignment:
| Q |
114 |
attgcatgtgaaaatcatagcggtgtgagctaaaaatggagaaaaggaaaagtaaatggtaaagagaatttggaatgatgctagaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3311256 |
attgcatgtgaaaatcatagcggtgtgagctaaaaatggag-aaaggaaaatcaaatggtaaagagaatttggaatgatgctagaa |
3311340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 3311045 - 3311116
Alignment:
| Q |
1 |
taggttaaag-cattaggaagatgccaatttattgaaagggtggagaggtggttacaaaaagtcagagatttag |
73 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3311045 |
taggttaaaggcattaggaagatgccaattgga--aaagggtggagaggtggttacaaaaagttagagatttag |
3311116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University