View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13138_low_44 (Length: 222)

Name: NF13138_low_44
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13138_low_44
NF13138_low_44
[»] chr6 (5 HSPs)
chr6 (18-100)||(34114598-34114681)
chr6 (163-204)||(34114494-34114535)
chr6 (171-204)||(34148677-34148710)
chr6 (171-204)||(34161293-34161326)
chr6 (168-197)||(34115549-34115578)
[»] chr4 (1 HSPs)
chr4 (170-204)||(48430646-48430680)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 34114681 - 34114598
Alignment:
Q  18 attttttccttttgaaattcatccttacaaaactccgtcgtctccagcatcctcatctataggtttag-agttaattaatattt 100  Q
    |||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| |||||||||||||||    
T  34114681 attttttccttttgaaattcatccttacaaaacttcgtattctccagcatcctcatctataggtttagaagttaattaatattt 34114598  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 34114535 - 34114494
Alignment:
Q  163 gtgccctataaactttgttaacatttccagaaaaacttgcct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34114535 gtgccctataaactttgttaacatttccagaaaaacttgcct 34114494  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 34148710 - 34148677
Alignment:
Q  171 taaactttgttaacatttccagaaaaacttgcct 204  Q
    ||||||||||||||||||||||||||||||||||    
T  34148710 taaactttgttaacatttccagaaaaacttgcct 34148677  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 34161326 - 34161293
Alignment:
Q  171 taaactttgttaacatttccagaaaaacttgcct 204  Q
    ||||||||||||||||||||||||||||||||||    
T  34161326 taaactttgttaacatttccagaaaaacttgcct 34161293  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 168 - 197
Target Start/End: Complemental strand, 34115578 - 34115549
Alignment:
Q  168 ctataaactttgttaacatttccagaaaaa 197  Q
    ||||||||||||||||||||||||||||||    
T  34115578 ctataaactttgttaacatttccagaaaaa 34115549  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 48430646 - 48430680
Alignment:
Q  170 ataaactttgttaacatttccagaaaaacttgcct 204  Q
    |||||||||||||| ||||||||||||||||||||    
T  48430646 ataaactttgttaagatttccagaaaaacttgcct 48430680  T

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