View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_5 (Length: 552)
Name: NF13138_low_5
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 9 - 552
Target Start/End: Complemental strand, 22774936 - 22774394
Alignment:
| Q |
9 |
cacagaacacaaattgaacttgaacaattctcattgttcatgttatcacaagctacagttctatgtaattgtaaactcaaaaattgagactaaattgcat |
108 |
Q |
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| T |
22774936 |
cacagaacacaaattgaacttgaacaattctcattgttcatattatcacaagctacagttctatgtaattgtaaactcaaaaattgagactaaattgcat |
22774837 |
T |
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| Q |
109 |
agtttgttaatctaatgtagctgtatttgcatgagaaaaattccacagtacacaagctgaagctgaacaatgtcattgttcataatgtcacaagatacaa |
208 |
Q |
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| T |
22774836 |
agtttgttaatctaatgtagctgtatttgcatgagaaaaattccacagaacacaaactgaagctgaacaatgtcattgttcataatgtcacaagatacaa |
22774737 |
T |
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| Q |
209 |
ttgtaaagtcaacaaatgagactgtattacaattttttgtaatacattctatgtgagaaattcattattcttcctccaatgaaatgataatttccatagt |
308 |
Q |
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| T |
22774736 |
ttgtaaagtcaacaaatgagactgtattacaattttttgtaaaacattctatgtgggacattcattattcttcctccaatgaaatgataatttccat-gt |
22774638 |
T |
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| Q |
309 |
ttcattttaacaaagcacaaattcatatgaaatatctattctatgtcatctaatgagtgtccagaaagagaattggcacnnnnnnncttcaatccttttg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
22774637 |
ttcattttaacaaagcacaaattcatatgaaatatctattctatgtcatctaatgagtgtccagaaagagaattggcacaaaaaaacttcaatcccgttg |
22774538 |
T |
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| Q |
409 |
ttcctttttaccaaagaaaacggttcttcaattaggcgaactcgatggaggcaagtacatttcatcctcacctgaaagatcttcatgaattgaaggcata |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22774537 |
ttcctttttaccaaagaaaacggttcttcaattaggcgaactcgatggaggcaagtacatttcatcctcacctgaaagatcttcatgaattgaaggcata |
22774438 |
T |
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| Q |
509 |
ggagacgatgcagcaacagcgagtatggtaatatcaaatcgagc |
552 |
Q |
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| T |
22774437 |
ggagacgatgcagcaacagcgagtatggtaatatcaaatcgagc |
22774394 |
T |
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