View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13138_low_6 (Length: 545)

Name: NF13138_low_6
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13138_low_6
NF13138_low_6
[»] chr8 (21 HSPs)
chr8 (16-545)||(1781562-1782091)
chr8 (322-520)||(18608606-18608803)
chr8 (22-116)||(1771002-1771097)
chr8 (323-389)||(10341065-10341131)
chr8 (422-520)||(43956806-43956904)
chr8 (431-519)||(25953132-25953220)
chr8 (323-393)||(25953263-25953333)
chr8 (422-520)||(14314867-14314965)
chr8 (422-520)||(14318571-14318669)
chr8 (422-520)||(18494133-18494230)
chr8 (422-520)||(26981831-26981929)
chr8 (323-393)||(34108259-34108329)
chr8 (422-520)||(34108381-34108479)
chr8 (323-389)||(43956957-43957023)
chr8 (323-393)||(14315015-14315085)
chr8 (323-393)||(14318719-14318789)
chr8 (323-393)||(18494280-18494350)
chr8 (323-393)||(26981980-26982050)
chr8 (422-520)||(26986945-26987043)
chr8 (323-393)||(26987093-26987163)
chr8 (422-520)||(10340923-10341021)
[»] chr7 (19 HSPs)
chr7 (323-520)||(4181359-4181556)
chr7 (334-526)||(37459813-37460004)
chr7 (332-516)||(5440260-5440453)
chr7 (332-516)||(5449270-5449463)
chr7 (323-393)||(14610394-14610464)
chr7 (323-393)||(12851704-12851774)
chr7 (422-520)||(12851826-12851924)
chr7 (323-393)||(12856819-12856889)
chr7 (422-520)||(12856939-12857037)
chr7 (323-393)||(26051051-26051121)
chr7 (323-393)||(26056164-26056234)
chr7 (323-393)||(26060410-26060480)
chr7 (323-393)||(26065523-26065593)
chr7 (415-526)||(35352270-35352382)
chr7 (430-520)||(26051179-26051269)
chr7 (430-520)||(26056292-26056382)
chr7 (430-520)||(26060538-26060628)
chr7 (430-520)||(26065651-26065741)
chr7 (323-388)||(11056655-11056720)
[»] chr4 (28 HSPs)
chr4 (331-519)||(47071446-47071638)
chr4 (323-518)||(34128218-34128411)
chr4 (323-510)||(34279479-34279665)
chr4 (331-519)||(54859134-54859323)
chr4 (418-520)||(3409564-3409666)
chr4 (323-518)||(18670870-18671076)
chr4 (323-389)||(18737192-18737258)
chr4 (417-520)||(30019804-30019906)
chr4 (323-388)||(32429392-32429457)
chr4 (331-389)||(18716527-18716585)
chr4 (323-393)||(30019954-30020024)
chr4 (418-516)||(14643705-14643803)
chr4 (331-393)||(14643834-14643896)
chr4 (417-520)||(22118850-22118955)
chr4 (323-393)||(3424803-3424874)
chr4 (429-520)||(32429249-32429340)
chr4 (422-520)||(35091065-35091163)
chr4 (323-393)||(35096058-35096128)
chr4 (422-520)||(35096178-35096276)
chr4 (418-479)||(3424707-3424768)
chr4 (490-538)||(25618186-25618234)
chr4 (490-526)||(47071668-47071704)
chr4 (490-520)||(18671107-18671137)
chr4 (490-520)||(18716757-18716787)
chr4 (490-520)||(18737430-18737460)
chr4 (486-518)||(18716694-18716726)
chr4 (486-518)||(18737367-18737399)
chr4 (490-538)||(32429172-32429220)
[»] chr1 (23 HSPs)
chr1 (415-538)||(16051328-16051451)
chr1 (323-520)||(44523987-44524196)
chr1 (417-520)||(10186537-10186640)
chr1 (417-520)||(19310958-19311061)
chr1 (323-393)||(17414640-17414710)
chr1 (323-393)||(35626202-35626272)
chr1 (323-393)||(10186683-10186753)
chr1 (331-520)||(21431637-21431838)
chr1 (323-520)||(43358783-43358991)
chr1 (441-517)||(13654478-13654554)
chr1 (325-393)||(19310856-19310924)
chr1 (323-393)||(1187858-1187927)
chr1 (422-520)||(3468218-3468316)
chr1 (422-520)||(28574447-28574545)
chr1 (422-520)||(28598459-28598557)
chr1 (418-520)||(35653209-35653311)
chr1 (323-393)||(3465503-3465573)
chr1 (323-393)||(3468097-3468167)
chr1 (323-393)||(28574327-28574397)
chr1 (323-393)||(28598339-28598409)
chr1 (323-389)||(13654365-13654433)
chr1 (415-478)||(17414566-17414629)
chr1 (486-526)||(1188025-1188065)
[»] chr5 (17 HSPs)
chr5 (331-520)||(43540738-43540925)
chr5 (323-516)||(35368861-35369065)
chr5 (422-520)||(13556260-13556358)
chr5 (323-393)||(13556409-13556479)
chr5 (323-393)||(2022994-2023064)
chr5 (422-526)||(2023104-2023207)
chr5 (418-517)||(43402092-43402191)
chr5 (323-393)||(4555683-4555753)
chr5 (422-520)||(9872380-9872478)
chr5 (422-520)||(9877495-9877593)
chr5 (323-393)||(9877643-9877713)
chr5 (323-393)||(39903875-39903945)
chr5 (323-393)||(39908988-39909058)
chr5 (422-520)||(39909108-39909206)
chr5 (323-393)||(9872528-9872598)
chr5 (430-520)||(39904003-39904093)
chr5 (331-387)||(25184130-25184186)
[»] chr6 (14 HSPs)
chr6 (323-520)||(24508816-24509002)
chr6 (441-520)||(20752094-20752173)
chr6 (422-520)||(21936642-21936740)
chr6 (422-516)||(21937716-21937810)
chr6 (422-516)||(24509850-24509944)
chr6 (323-389)||(2887520-2887586)
chr6 (323-393)||(21936784-21936854)
chr6 (323-389)||(2889242-2889308)
chr6 (323-393)||(11183270-11183340)
chr6 (331-393)||(24509741-24509803)
chr6 (323-393)||(21275803-21275873)
chr6 (422-520)||(21275923-21276021)
chr6 (323-391)||(21937600-21937668)
chr6 (323-393)||(20752222-20752292)
[»] chr3 (40 HSPs)
chr3 (422-526)||(49784636-49784740)
chr3 (323-520)||(29827454-29827651)
chr3 (325-393)||(18024252-18024320)
chr3 (323-393)||(20891089-20891159)
chr3 (323-390)||(3187561-3187628)
chr3 (422-520)||(4049958-4050056)
chr3 (422-520)||(5457967-5458065)
chr3 (323-393)||(5458116-5458186)
chr3 (422-520)||(5481444-5481542)
chr3 (323-393)||(5481592-5481662)
chr3 (323-393)||(6858159-6858229)
chr3 (323-393)||(8458341-8458411)
chr3 (323-393)||(8464780-8464850)
chr3 (422-520)||(8464900-8464998)
chr3 (422-520)||(10584814-10584912)
chr3 (323-389)||(49784526-49784592)
chr3 (415-479)||(18024177-18024241)
chr3 (422-520)||(1302200-1302298)
chr3 (323-393)||(1302349-1302419)
chr3 (323-393)||(4049837-4049907)
chr3 (422-520)||(4055092-4055190)
chr3 (331-393)||(6853056-6853118)
chr3 (323-393)||(10584962-10585032)
chr3 (422-520)||(10591251-10591349)
chr3 (323-393)||(10591399-10591469)
chr3 (422-520)||(10672894-10672992)
chr3 (323-393)||(10673042-10673112)
chr3 (323-393)||(10678157-10678227)
chr3 (323-393)||(31076506-31076576)
chr3 (323-393)||(31081611-31081681)
chr3 (422-520)||(33702555-33702653)
chr3 (323-393)||(33702704-33702774)
chr3 (323-393)||(33703329-33703399)
chr3 (323-393)||(4054971-4055041)
chr3 (422-520)||(6852908-6853006)
chr3 (422-520)||(6858011-6858109)
chr3 (430-516)||(8458470-8458556)
chr3 (422-520)||(31076358-31076456)
chr3 (422-520)||(31081463-31081561)
chr3 (422-478)||(33703450-33703506)
[»] chr2 (13 HSPs)
chr2 (323-516)||(716297-716498)
chr2 (422-518)||(42780323-42780419)
chr2 (323-520)||(30283406-30283615)
chr2 (417-520)||(20892306-20892408)
chr2 (323-393)||(14917486-14917556)
chr2 (422-520)||(45120537-45120635)
chr2 (422-520)||(14917338-14917436)
chr2 (323-389)||(16284467-16284534)
chr2 (422-520)||(17720482-17720580)
chr2 (323-393)||(17720630-17720700)
chr2 (323-393)||(45120416-45120486)
chr2 (323-367)||(42780214-42780258)
chr2 (490-520)||(42780450-42780480)
[»] scaffold0006 (2 HSPs)
scaffold0006 (441-517)||(144239-144315)
scaffold0006 (323-389)||(144126-144194)
[»] scaffold0223 (2 HSPs)
scaffold0223 (422-520)||(1975-2073)
scaffold0223 (323-392)||(2124-2193)
[»] scaffold0005 (2 HSPs)
scaffold0005 (331-393)||(173396-173458)
scaffold0005 (418-516)||(173489-173587)


Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Original strand, 1781562 - 1782091
Alignment:
Q  16 acaaaccaaaatcttaatcctaacggccaaactaaattattctacatatggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781562 acaaaccaaaatcttaatcctaacggccaaactaaattattctacatatggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatc 1781661  T
Q  116 ctcgtnnnnnnnttattgttggtgttcagtcatttcgactattcaaccacatgttgacaagccacttgcaaagcaaatagaatgatgaatttggtgatag 215  Q
    |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781662 ctcgtaaaaaaattattgttggtgttcagtcatttcgactattcaaccacatgttgacaagccacttgcaaagcaaatagaatgatgaatttggtgatag 1781761  T
Q  216 aaacgataagtcttttactcaaatacaataatgacaaaataatcgctctcaaacgtttcaacaaacacatggagtacacacatgaagcaaattaaaataa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781762 aaacgataagtcttttactcaaatacaataatgacaaaataatcgctctcaaacgtttcaacaaacacatggagtacacacatgaagcaaattaaaataa 1781861  T
Q  316 ttgtgaaactcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcct 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1781862 ttgtgaaactcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcct 1781961  T
Q  416 ccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcatta 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1781962 ccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcacatgagagaaaatactattttgacttgaatcaatgttatggttcatta 1782061  T
Q  516 agcacgcattttctaaatgttatcatatac 545  Q
    ||||||||||||||||||||||||||||||    
T  1782062 agcacgcattttctaaatgttatcatatac 1782091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 322 - 520
Target Start/End: Complemental strand, 18608803 - 18608606
Alignment:
Q  322 aactcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctg-ttgttgtgtcctccaaa 420  Q
    |||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||  ||||  || || |||||| | |||||    
T  18608803 aactcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaattcttgtttcttgtgtgc-ccaaa 18608705  T
Q  421 ttaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    |||||| | ||||| ||||||||| ||||||| |||| |||| |||| ||||||||||| ||   ||| |||||||||||||||||||||||||||||||    
T  18608704 ttaatgcctaaatgccaaacatttgtagtgcattatatgacc-ttcacatgagagaaaacacccctttaacttgaatcaatgttatggttcattaagcac 18608606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 1771002 - 1771097
Alignment:
Q  22 caaaatcttaatcctaacggccaaactaaatta-ttctacatatggtcaatggtaaagagtaataaaagattcatatgctttaattacatccatcc 116  Q
    ||||||||||||||||||  ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||    
T  1771002 caaaatcttaatcctaaccaccaaactaaattaattccacatatggtcaatggtaaagagtaataaaagattcatagactttaattgcatccatcc 1771097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 10341131 - 10341065
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 389  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||    
T  10341131 actcatgcattagagaatttatggatgatttagagtaagagaatgagggagaattatgttgttaatg 10341065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 43956904 - 43956806
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  |||  ||||||||||||||||| |||| ||||||||||||    
T  43956904 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcactcatttgacttgaatcaatgctatgattcattaagcac 43956806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 431 - 519
Target Start/End: Complemental strand, 25953220 - 25953132
Alignment:
Q  431 aatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagca 519  Q
    |||| ||||||||||||||||| |||| |||| |||| ||||||||||| ||   |||||||| ||||||| |||||||||||||||||    
T  25953220 aatgccaaacatttatagtgcattatatgaccattcacatgagagaaaacacccatttgacttaaatcaattttatggttcattaagca 25953132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 25953333 - 25953263
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||| ||||| |||||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  25953333 actcatgcattagacaattgatggatgatttagagtatgagaatgatggagaattatgttgttaatgtaac 25953263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 14314965 - 14314867
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||||||    
T  14314965 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatgccatgattcattaagcac 14314867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 14318669 - 14318571
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||||||    
T  14318669 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatgccatgattcattaagcac 14318571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 18494230 - 18494133
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||  |||| |||||||||||||| ||| ||||||||||||    
T  18494230 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcac-cttttaacttgaatcaatgtcatgattcattaagcac 18494133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 26981929 - 26981831
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||||||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  26981929 taatgcccaaatgtcaaacatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 26981831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 34108259 - 34108329
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  34108259 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 34108329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 34108381 - 34108479
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||| ||| ||||||||||||    
T  34108381 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgtcatgattcattaagcac 34108479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 43957023 - 43956957
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 389  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||    
T  43957023 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatg 43956957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 14315085 - 14315015
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  14315085 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 14315015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 14318789 - 14318719
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  14318789 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 14318719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 18494350 - 18494280
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  18494350 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 18494280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 26982050 - 26981980
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26982050 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26981980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 26987043 - 26986945
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  26987043 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 26986945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 26987163 - 26987093
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26987163 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26987093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 10341021 - 10340923
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||| ||| ||||||| ||||| |||| |||  |||| |||||| |||  ||   ||||||||||||||||| |||| ||||||||||||    
T  10341021 taatgcccaaatgccaagcatttatggtgcattatatgactcttcacatgagaaaaagcacctctttgacttgaatcaatgctatgattcattaagcac 10340923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 1e-45; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 323 - 520
Target Start/End: Complemental strand, 4181556 - 4181359
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctccaaatt 422  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||||||| |||||||||||||||| |||  ||||   |||  |||||    ||||||    
T  4181556 actcatgcattagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatgcaacaaaattctcgtttatgtgtgtgtcaaatt 4181457  T
Q  423 aatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    |||| ||||||||||||||||||||||||| |||| |||  |||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||    
T  4181456 aatgcccaaatgtcaaacatttatagtgcattatatgactcttcatatgagagaaaacaccattttgacttgaatcaatgttaaggttcattaagcac 4181359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 334 - 526
Target Start/End: Complemental strand, 37460004 - 37459813
Alignment:
Q  334 agagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctccaaattaatgtccaaat 433  Q
    ||||||||| |||||||||| ||||||||||||| |||| |||||||||||| |||||||  |||| || |  |||| |  |||| ||||||| ||||||    
T  37460004 agagaattgatggatgatttagagtaagagaatgtgggagaattatgttgttcatgtaacataattcctatatttgtatg-tccatattaatgcccaaat 37459906  T
Q  434 gtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcacgcattt 526  Q
    |||||  |||||||||||| |||| | || |||| ||||||||||| ||   ||||| ||||||  ||||||||||||||||| ||| |||||    
T  37459905 gtcaagtatttatagtgcattatatgtccattcacatgagagaaaacacgcatttgatttgaattgatgttatggttcattaaacactcattt 37459813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 516
Target Start/End: Complemental strand, 5440453 - 5440260
Alignment:
Q  332 ttagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttct----------gttgttgtgtcctccaaat 421  Q
    ||||||||||| | |||||||| ||||||| |||||||||| |||||||||||||||||||   || ||||          ||| ||||||  |||||||    
T  5440453 ttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaataaaaattcttgttcttgttgtttttgtgtg-tccaaat 5440355  T
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    ||| | ||||||| ||| ||||||||||||| |||| |||| |||| ||||||||||| ||   |||||||||||||||||||||||||||||||    
T  5440354 taaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttgacttgaatcaatgttatggttcattaa 5440260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 332 - 516
Target Start/End: Complemental strand, 5449463 - 5449270
Alignment:
Q  332 ttagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttct----------gttgttgtgtcctccaaat 421  Q
    ||||||||||| | |||||||| ||||||| |||||||||| |||||||||||||||||||   || ||||          ||| ||||||  |||||||    
T  5449463 ttagagaattgatcgatgatttagagtaagggaatgagggagaattatgttgttaatgtaataaaaattcttgttcttgttgtttttgtgtg-tccaaat 5449365  T
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    ||| | ||||||| ||| ||||||||||||| |||| |||| |||| ||||||||||| ||   |||||||||||||||||||||||||||||||    
T  5449364 taaagcccaaatgccaagcatttatagtgcattatatgacccttcacatgagagaaaacacccatttgacttgaatcaatgttatggttcattaa 5449270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 14610394 - 14610464
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||||||    
T  14610394 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaac 14610464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 12851704 - 12851774
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  12851704 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 12851774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 12851826 - 12851924
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| |||||||||||  |||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||| ||| ||||||||||||    
T  12851826 taatgcccaaatgtcaagtatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgtcatgattcattaagcac 12851924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 12856819 - 12856889
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  12856819 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 12856889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 12856939 - 12857037
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  12856939 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 12857037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 26051051 - 26051121
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26051051 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26051121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 26056164 - 26056234
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26056164 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26056234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 26060410 - 26060480
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26060410 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26060480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 26065523 - 26065593
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  26065523 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 26065593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 415 - 526
Target Start/End: Complemental strand, 35352382 - 35352270
Alignment:
Q  415 tccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttc-agatgagagaaaatactattttgacttgaatcaatgttatggttcat 513  Q
    |||||||||||| ||||||||||| ||| ||| ||||| |||| |||| ||| | ||||||||||||     |||||||||| |||| | | ||||||||    
T  35352382 tccaaattaatgcccaaatgtcaagcatatatggtgcattatatgacccttcaaaatgagagaaaatgtctctttgacttgattcaacgatttggttcat 35352283  T
Q  514 taagcacgcattt 526  Q
    ||||||| |||||    
T  35352282 taagcacccattt 35352270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 26051179 - 26051269
Alignment:
Q  430 aaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  26051179 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 26051269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 26056292 - 26056382
Alignment:
Q  430 aaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  26056292 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 26056382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 26060538 - 26060628
Alignment:
Q  430 aaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  26060538 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 26060628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 26065651 - 26065741
Alignment:
Q  430 aaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  26065651 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 26065741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 388
Target Start/End: Original strand, 11056655 - 11056720
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaat 388  Q
    ||||||| |||| ||||||| ||||||||||  |||||||||||||   | |||||||||||||||    
T  11056655 actcatgcattaaagaattgatggatgatttaaagtaagagaatgataaagaattatgttgttaat 11056720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 331 - 519
Target Start/End: Original strand, 47071446 - 47071638
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctccaaattaatgtcca 430  Q
    |||||||||||| | ||| |||| |||||||||||||||||| ||||||||||||||||||||  |||||||||| |  |||  |||||||||||| |||    
T  47071446 attagagaattgatagataatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaatttctgttct--tgttgtccaaattaatgccca 47071543  T
Q  431 aatgtcaaacatttatagtgcagtatacgacctttc------agatgagagaaaatactattttgacttgaatcaatgttatggttcattaagca 519  Q
    ||||| ||||||||||||| || |||| |||| |||      | ||||||||||| ||| ||||||||||||||||||  |||||||||||||||    
T  47071544 aatgttaaacatttatagtacattatatgacccttcacatgaacatgagagaaaacacttttttgacttgaatcaatgcaatggttcattaagca 47071638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 323 - 518
Target Start/End: Complemental strand, 34128411 - 34128218
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgtt--gtgtcctccaaa 420  Q
    ||||||| |||||| ||||| |||||||||| |||||||||||||||||| ||||||| |||||||| |||  ||||  ||||  |  |||||    |||    
T  34128411 actcatgcattagaaaattgatggatgatttagagtaagagaatgagggagaattatgatgttaatgcaacaaaattcttgtttcttagtgtc----aaa 34128316  T
Q  421 ttaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagc 518  Q
    |||||| ||||||||||| ||||||||||||| |||| |||| |||| || |||||||| |||  ||||||||||||||||||||| |||||||||||    
T  34128315 ttaatggccaaatgtcaagcatttatagtgcattatatgacccttcacattagagaaaacactcatttgacttgaatcaatgttatagttcattaagc 34128218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 323 - 510
Target Start/End: Complemental strand, 34279665 - 34279479
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctccaaatt 422  Q
    ||||||| |||||||||||| ||| |||||| ||||||||||| |||| | ||||||||||||||||||||  ||||  |||| | ||||    ||||||    
T  34279665 actcatgcattagagaattgatggttgatttagagtaagagaacgaggaagaattatgttgttaatgtaacaaaattcatgttct-gtgtgtgtcaaatt 34279567  T
Q  423 aatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggtt 510  Q
    ||||  |||||||| | ||||||||||||| |||| |||| |||| ||||||||||| |||  |||||||||||||||||||||||||    
T  34279566 aatgctcaaatgtcgagcatttatagtgcattatatgacccttcacatgagagaaaacactcatttgacttgaatcaatgttatggtt 34279479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 331 - 519
Target Start/End: Complemental strand, 54859323 - 54859134
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctccaaattaatgtcca 430  Q
    |||||||||||| |||||||||| ||| |||||||||||||| ||| ||||||||||||| ||  |||| |  || | ||    |||||||||||| |||    
T  54859323 attagagaattgatggatgatttagagcaagagaatgagggagaatcatgttgttaatgtgacaaaattccatttttggttgtgtccaaattaatgccca 54859224  T
Q  431 aatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaata-ctattttgacttgaatcaatgttatggttcattaagca 519  Q
    ||| |||| ||||||||||||| |||| |||| |||| ||||||||||| | |   ||||||||||||||||||||||||||||||||||    
T  54859223 aatatcaagcatttatagtgcattatatgacccttcacatgagagaaaacaccccctttgacttgaatcaatgttatggttcattaagca 54859134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 418 - 520
Target Start/End: Complemental strand, 3409666 - 3409564
Alignment:
Q  418 aaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaag 517  Q
    ||||||||| |||||||||||| |||||||||||| |||| |||| |||| ||||||||||| |||  ||||||||||||||||| |||| |||||||||    
T  3409666 aaattaatgcccaaatgtcaaatatttatagtgcattatatgacccttcacatgagagaaaacactcctttgacttgaatcaatgctatgattcattaag 3409567  T
Q  518 cac 520  Q
    |||    
T  3409566 cac 3409564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 323 - 518
Target Start/End: Original strand, 18670870 - 18671076
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaa------tttct------gttgttgt 410  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||| |||  ||      |||||       |||||||    
T  18670870 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgcaacataattctggtttctattgtctttgttgt 18670969  T
Q  411 gtcctccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggtt 510  Q
    ||  |||||||||||  ||||||| ||| |||||||||| || |||| |||| |||| ||||||||||  ||   ||||||||||||||||| |||||||    
T  18670970 gt-gtccaaattaattcccaaatgccaagcatttatagtccattatatgacccttcacatgagagaaagcacccatttgacttgaatcaatgctatggtt 18671068  T
Q  511 cattaagc 518  Q
    ||||||||    
T  18671069 cattaagc 18671076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 18737192 - 18737258
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 389  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||    
T  18737192 actcatgaattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatg 18737258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 417 - 520
Target Start/End: Complemental strand, 30019906 - 30019804
Alignment:
Q  417 caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    |||| ||||| ||||||| ||||||||||||||||| |||| |||| |||| ||||||||||  ||   ||||||||||||| |||||||||||||||||    
T  30019906 caaactaatgcccaaatgccaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttgacttgaatc-atgttatggttcattaa 30019808  T
Q  517 gcac 520  Q
    ||||    
T  30019807 gcac 30019804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 388
Target Start/End: Complemental strand, 32429457 - 32429392
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaat 388  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||    
T  32429457 actcatgcattaaagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaat 32429392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 18716527 - 18716585
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 389  Q
    |||||||||||| |||||||||| ||||||||||||| |||| ||||||||||||||||    
T  18716527 attagagaattgatggatgatttagagtaagagaatgggggagaattatgttgttaatg 18716585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 30020024 - 30019954
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||  | | ||||||||||||||||||||    
T  30020024 actcatgcattagagaattgatggatgatttagagtaagagaatggtgaagaattatgttgttaatgtaac 30019954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 516
Target Start/End: Complemental strand, 14643803 - 14643705
Alignment:
Q  418 aaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    |||||||||  ||||| |||||||||||||| ||| |||| |||| |||| |||| |||||| ||   ||||||||||||||||| || ||||||||||    
T  14643803 aaattaatgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttgacttgaatcaatgctaaggttcattaa 14643705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 14643896 - 14643834
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    |||||||||||| |||||||||| |||||||||||| ||| | |||||||||||| |||||||    
T  14643896 attagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttgatgtaac 14643834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 22118850 - 22118955
Alignment:
Q  417 caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaat--actattttgacttgaatcaatgttatggttcatt 514  Q
    |||||||||| ||||||||||| ||||||||||  | |||| |||| |||| ||||||||||||  ||   |||||||||||| |||  |||||||||||    
T  22118850 caaattaatgcccaaatgtcaagcatttatagtatattatatgacccttcacatgagagaaaatacacccctttgacttgaatgaataatatggttcatt 22118949  T
Q  515 aagcac 520  Q
    ||||||    
T  22118950 aagcac 22118955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 3424874 - 3424803
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggata-attatgttgttaatgtaac 393  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||||||| |  |||||||||||| |||||    
T  3424874 actcatgcattagagaattaatggatgatttagagtaagagaatgagggagatcttatgttgttaaagtaac 3424803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 520
Target Start/End: Complemental strand, 32429340 - 32429249
Alignment:
Q  429 caaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    |||||| ||| ||||||||||||| |||| |||  |||| ||||||||||| ||   |||||||||||||||||  ||| ||||||||||||    
T  32429340 caaatgccaagcatttatagtgcattatatgactcttcaaatgagagaaaacacccctttgacttgaatcaatgccatgattcattaagcac 32429249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 35091065 - 35091163
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  35091065 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 35091163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 35096058 - 35096128
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  35096058 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 35096128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 35096178 - 35096276
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  35096178 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 35096276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 3424768 - 3424707
Alignment:
Q  418 aaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaa 479  Q
    ||||||||| |||||| ||||| |||||||||||| |||| |||| |||| |||||||||||    
T  3424768 aaattaatgcccaaatatcaaatatttatagtgcattatatgacccttcacatgagagaaaa 3424707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 538
Target Start/End: Complemental strand, 25618234 - 25618186
Alignment:
Q  490 acttgaatcaatgttatggttcattaagcacgcattttctaaatgttat 538  Q
    ||||||||||||||||||||||||||||||| | ||| | |||||||||    
T  25618234 acttgaatcaatgttatggttcattaagcacccttttgccaaatgttat 25618186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 490 - 526
Target Start/End: Original strand, 47071668 - 47071704
Alignment:
Q  490 acttgaatcaatgttatggttcattaagcacgcattt 526  Q
    ||||||||||||||||||||||||||||||| |||||    
T  47071668 acttgaatcaatgttatggttcattaagcacccattt 47071704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 520
Target Start/End: Original strand, 18671107 - 18671137
Alignment:
Q  490 acttgaatcaatgttatggttcattaagcac 520  Q
    |||||||||||||||||||||||||||||||    
T  18671107 acttgaatcaatgttatggttcattaagcac 18671137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 520
Target Start/End: Original strand, 18716757 - 18716787
Alignment:
Q  490 acttgaatcaatgttatggttcattaagcac 520  Q
    |||||||||||||||||||||||||||||||    
T  18716757 acttgaatcaatgttatggttcattaagcac 18716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 520
Target Start/End: Original strand, 18737430 - 18737460
Alignment:
Q  490 acttgaatcaatgttatggttcattaagcac 520  Q
    |||||||||||||||||||||||||||||||    
T  18737430 acttgaatcaatgttatggttcattaagcac 18737460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 18716694 - 18716726
Alignment:
Q  486 tttgacttgaatcaatgttatggttcattaagc 518  Q
    ||||||||||||||||| |||||||||||||||    
T  18716694 tttgacttgaatcaatgatatggttcattaagc 18716726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 518
Target Start/End: Original strand, 18737367 - 18737399
Alignment:
Q  486 tttgacttgaatcaatgttatggttcattaagc 518  Q
    ||||||||||||||||| |||||||||||||||    
T  18737367 tttgacttgaatcaatgatatggttcattaagc 18737399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 490 - 538
Target Start/End: Complemental strand, 32429220 - 32429172
Alignment:
Q  490 acttgaatcaatgttatggttcattaagcacgcattttctaaatgttat 538  Q
    |||||||||||||||||| |||||||||||| | ||| | |||||||||    
T  32429220 acttgaatcaatgttatgattcattaagcacccttttgccaaatgttat 32429172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 415 - 538
Target Start/End: Original strand, 16051328 - 16051451
Alignment:
Q  415 tccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcatt 514  Q
    |||||||||||| ||||||||||||||||||||||||| |||| |||| |||| ||||| ||||| ||  |||||||||||||||||| |||||||||||    
T  16051328 tccaaattaatgcccaaatgtcaaacatttatagtgcattatatgaccattcacatgagtgaaaacacccttttgacttgaatcaatgatatggttcatt 16051427  T
Q  515 aagcacgcattttctaaatgttat 538  Q
    |||||| ||||| | |||||||||    
T  16051428 aagcactcatttgccaaatgttat 16051451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 323 - 520
Target Start/End: Complemental strand, 44524196 - 44523987
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaat-ttctgtt----------gttgt- 410  Q
    ||||||| |||||||||||| ||||||||||  ||||||||||||| ||| |||||||||||||||| |||  ||| |||||||          |||||     
T  44524196 actcatgcattagagaattgatggatgatttaaagtaagagaatgatggagaattatgttgttaatgcaac--aatattctgttcaaattgtgtgttgtt 44524099  T
Q  411 gtcctccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagat--gagagaaaatactattttgacttgaatcaatgttatgg 508  Q
    ||  | |||||||||| ||||||||||||||||||||||||| |||| |||| |||| ||  ||| ||||| ||   |||||||||||||||||||||||    
T  44524098 gttgttcaaattaatgcccaaatgtcaaacatttatagtgcattatatgacccttcacatatgagggaaaacacccatttgacttgaatcaatgttatgg 44523999  T
Q  509 ttcattaagcac 520  Q
    ||||||||||||    
T  44523998 ttcattaagcac 44523987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 417 - 520
Target Start/End: Complemental strand, 10186640 - 10186537
Alignment:
Q  417 caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    |||||||||| ||||||||||||||||||||||||| |||| |||| |||| ||||||||||  ||   ||||||||||| ||||| |||||||||||||    
T  10186640 caaattaatgcccaaatgtcaaacatttatagtgcattatatgacccttcacatgagagaaagcacccatttgacttgaaccaatgctatggttcattaa 10186541  T
Q  517 gcac 520  Q
    ||||    
T  10186540 gcac 10186537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 417 - 520
Target Start/End: Original strand, 19310958 - 19311061
Alignment:
Q  417 caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    |||||||||| ||||||||||||||||||||||||| || | |||| |||| ||||||||||  ||   ||||||||||||||||||||| |||||||||    
T  19310958 caaattaatgcccaaatgtcaaacatttatagtgcattacatgacccttcacatgagagaaagcacccctttgacttgaatcaatgttatagttcattaa 19311057  T
Q  517 gcac 520  Q
    ||||    
T  19311058 gcac 19311061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 17414710 - 17414640
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  17414710 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 17414640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 35626202 - 35626272
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35626202 actcatgcattagagaattgatggatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 35626272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10186753 - 10186683
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||| ||| ||||||||||||||||||||    
T  10186753 actcatgcattagagaattgatggatgatttagagtaagagaatgatggagaattatgttgttaatgtaac 10186683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 331 - 520
Target Start/End: Complemental strand, 21431838 - 21431637
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttg--------tgtcctc---caa 419  Q
    |||||||||||| |||||||||| || ||||||||||||||| |||||||||||||||| |||  ||||  |||| |||        ||| |||   | |    
T  21431838 attagagaattgatggatgatttagattaagagaatgagggagaattatgttgttaatgcaacaaaattcttgttcttgttttctgttgttctctgtcca 21431739  T
Q  420 attaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaata-ctattttgacttgaatcaatgttatggttcattaagc 518  Q
    | ||||| ||||||||||| ||||||||||||| |||| |||| |||| ||||||||||  | |   |||||||| ||||||||||||||||||||||||    
T  21431738 actaatgcccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaagcaccccctttgacttaaatcaatgttatggttcattaagc 21431639  T
Q  519 ac 520  Q
    ||    
T  21431638 ac 21431637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 323 - 520
Target Start/End: Original strand, 43358783 - 43358991
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatt-------------tctgttgttg 409  Q
    ||||||| |||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||  ||||             | |||||| |    
T  43358783 actcatgcattagagaattgatggataatttagagtaagagaatgagggagaattatgttgttaatgtaacaaaattcagtccaaaattgtgtgttgtag 43358882  T
Q  410 tgtcctccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggt 509  Q
    |||  ||||| | |||| ||||||| ||| ||||||||||||| |||| |||  |||| ||||||||||  |||  ||||||||||||||||| |||| |    
T  43358883 tgtg-tccaact-aatgcccaaatgccaagcatttatagtgcattataggactcttcacatgagagaaagcactcatttgacttgaatcaatgctatgat 43358980  T
Q  510 tcattaagcac 520  Q
    |||||||||||    
T  43358981 tcattaagcac 43358991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 517
Target Start/End: Original strand, 13654478 - 13654554
Alignment:
Q  441 atttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaag 517  Q
    |||||||||||| |||| |||| |||| ||||||||||| ||   ||||||||||||||||||||||||||||||||    
T  13654478 atttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggttcattaag 13654554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 393
Target Start/End: Original strand, 19310856 - 19310924
Alignment:
Q  325 tcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||| |||||||||||| ||||||||||  ||||||||||||||||| |||||| |||||||||||||    
T  19310856 tcatgcattagagaattgatggatgatttatagtaagagaatgagggagaattatattgttaatgtaac 19310924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 1187858 - 1187927
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  1187858 actcatgcattaaagaattgatggatgatttagagtaagagaatga-ggagatttatgttgttaatgtaac 1187927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 3468218 - 3468316
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||| ||| ||||||||||||    
T  3468218 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacatctttaacttgaatcaatgtcatgattcattaagcac 3468316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 28574447 - 28574545
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||||||    
T  28574447 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatgccatgattcattaagcac 28574545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 28598459 - 28598557
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||||||    
T  28598459 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctatttaacttgaatcaatgccatgattcattaagcac 28598557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 520
Target Start/End: Complemental strand, 35653311 - 35653209
Alignment:
Q  418 aaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaag 517  Q
    ||||||||| |||||||||||   ||||||  ||  |||| |||| |||| ||||||||||| |||  ||||| ||||||||||| ||||||||||||||    
T  35653311 aaattaatgcccaaatgtcaagtgtttataaggctatatatgacccttcacatgagagaaaacactcatttgaattgaatcaatgatatggttcattaag 35653212  T
Q  518 cac 520  Q
    |||    
T  35653211 cac 35653209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 3465503 - 3465573
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  3465503 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 3465573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 3468097 - 3468167
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  3468097 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 3468167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 28574327 - 28574397
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  28574327 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 28574397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 28598339 - 28598409
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  28598339 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 28598409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 13654365 - 13654433
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagt--aagagaatgagggataattatgttgttaatg 389  Q
    ||||||| |||||||||||  |||||||||| |||   |||||||||||||| ||||||||||||||||    
T  13654365 actcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatg 13654433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 478
Target Start/End: Complemental strand, 17414629 - 17414566
Alignment:
Q  415 tccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaa 478  Q
    |||||||| ||| ||||||| ||| ||||||||||||| |||| |||| |||| ||||||||||    
T  17414629 tccaaattgatgcccaaatgccaagcatttatagtgcattatatgaccattcacatgagagaaa 17414566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 526
Target Start/End: Original strand, 1188025 - 1188065
Alignment:
Q  486 tttgacttgaatcaatgttatggttcattaagcacgcattt 526  Q
    |||||||||||| |||||||||||||||||| ||| |||||    
T  1188025 tttgacttgaattaatgttatggttcattaaacacccattt 1188065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 331 - 520
Target Start/End: Complemental strand, 43540925 - 43540738
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctccaaattaatgtcca 430  Q
    |||||||||||| | |||||||| |||||||||||||| ||| || |||||||||||||||||  ||||||| ||  |||    |||||||||||| |||    
T  43540925 attagagaattgatagatgatttagagtaagagaatgatggagaactatgttgttaatgtaacaaaatttctattcatgttatgtccaaattaatgccca 43540826  T
Q  431 aatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
     ||| |||  |||||||||||| |||| |||| |||| ||||||||| |  ||  |||||||||| ||||||||||||||||||||||||    
T  43540825 gatgccaagtatttatagtgcattatatgacccttcacatgagagaaca--ctcatttgacttgagtcaatgttatggttcattaagcac 43540738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 516
Target Start/End: Complemental strand, 35369065 - 35368861
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgtt---gttgtgtcctc--- 416  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||||| | ||||||||| || ||| |||  ||||  ||||   |||||||  |        
T  35369065 actcatgcattagagaattgatggatgatttagagtaagagaatgaggaagaattatgtttttgatgcaacaaaattcttgtttttgttgtgtgttgttg 35368966  T
Q  417 -----caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttc 511  Q
         |||||||||| ||||||||||| ||||||||||||| |||| ||| ||||| ||||||||||| |||  |||||||||||||||||||||| |||    
T  35368965 tgtgtcaaattaatgcccaaatgtcaagcatttatagtgcattatatgacttttcacatgagagaaaacactcatttgacttgaatcaatgttatgattc 35368866  T
Q  512 attaa 516  Q
    |||||    
T  35368865 attaa 35368861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 13556358 - 13556260
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||||||||||||||||| |||| ||||||||||||    
T  13556358 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacccatttgacttgaatcaatgctatgattcattaagcac 13556260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 13556479 - 13556409
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||| | | ||||||||||||||||||||    
T  13556479 actcatgcattagagaattgatggatgatttagaataagagaatgatgaagaattatgttgttaatgtaac 13556409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 2022994 - 2023064
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||||||||||  | | ||||||||||||||||||||    
T  2022994 actcatgcattagagaattgatggatgatttagaataagagaatggtgaagaattatgttgttaatgtaac 2023064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 526
Target Start/End: Original strand, 2023104 - 2023207
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcacg 521  Q
    ||||| ||| ||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   |||||||||||||||||||||| |||||||| |||     
T  2023104 taatgcccatatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcac-cctttgacttgaatcaatgttatgattcattaaacacc 2023202  T
Q  522 cattt 526  Q
    |||||    
T  2023203 cattt 2023207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 517
Target Start/End: Complemental strand, 43402191 - 43402092
Alignment:
Q  418 aaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaag 517  Q
    ||||||||| |  |||| ||||||||||||||||| |||| || | |||| |||| |||||| |  | ||||| | ||||||||||||||||||||||||    
T  43402191 aaattaatgcctcaatgacaaacatttatagtgcattatatgatccttcatatgaaagaaaacatcaatttgattcgaatcaatgttatggttcattaag 43402092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 4555683 - 4555753
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||  |||||||||| |||||| ||||||  | | ||||||||||||||||||||    
T  4555683 actcatgcattagagaattaatggatgatttagagtaatagaatggtgaagaattatgttgttaatgtaac 4555753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 9872478 - 9872380
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  9872478 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgccatgattcattaagcac 9872380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 9877593 - 9877495
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  9877593 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgccatgattcattaagcac 9877495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 9877713 - 9877643
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  9877713 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 9877643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 39903875 - 39903945
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  39903875 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 39903945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 39908988 - 39909058
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  39908988 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 39909058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 39909108 - 39909206
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  39909108 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgccatgattcattaagcac 39909206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 9872598 - 9872528
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| |||||   | | ||||||||||||||||||||    
T  9872598 actcatgcattagagaattgatggatgatttagaataatagaattgtgaagaattatgttgttaatgtaac 9872528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 39904003 - 39904093
Alignment:
Q  430 aaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  39904003 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgccatgattcattaagcac 39904093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 387
Target Start/End: Original strand, 25184130 - 25184186
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaa 387  Q
    |||||||||||| |||||||||| |||||||||||||  | | || |||||||||||    
T  25184130 attagagaattgatggatgatttagagtaagagaatggtgaagaaatatgttgttaa 25184186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 323 - 520
Target Start/End: Complemental strand, 24509002 - 24508816
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctccaaatt 422  Q
    ||||||| |||||||||||| |||||||||| |||||| ||||||| ||| ||||||||||||||||||||  |||||         ||| |   |||||    
T  24509002 actcatgcattagagaattgatggatgatttagagtaaaagaatgatggagaattatgttgttaatgtaacataattt---------tgtaca--aaatt 24508914  T
Q  423 aatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    |||| ||||||| |||||||||| ||| ||  ||| |||| |||  ||||||||||| ||   |||||||||||||||||||||||||||||||||||    
T  24508913 aatgcccaaatgccaaacatttacagtacataatatgacccttctcatgagagaaaacacccctttgacttgaatcaatgttatggttcattaagcac 24508816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 441 - 520
Target Start/End: Complemental strand, 20752173 - 20752094
Alignment:
Q  441 atttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    |||||||||||| || | ||||||||| ||||||||||| |||  |||||||||||||||||||||||||||||||||||    
T  20752173 atttatagtgcattagatgacctttcacatgagagaaaacactcatttgacttgaatcaatgttatggttcattaagcac 20752094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 21936740 - 21936642
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| |||||||| || ||||||||||||| |||| |||| |||| ||||||||||| ||   ||||||||||||||||||||||||| |||||||||    
T  21936740 taatgcccaaatgttaagcatttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggtttattaagcac 21936642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 21937716 - 21937810
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    ||||| ||||||| ||||||||||||||||  |||| |||| |||| ||||||||||||||   |||||||||||||||||| ||||||||||||    
T  21937716 taatgcccaaatgccaaacatttatagtgcgttatatgacccttcacatgagagaaaatacccctttgacttgaatcaatgtgatggttcattaa 21937810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 422 - 516
Target Start/End: Original strand, 24509850 - 24509944
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    ||||| ||||||||||| ||||||||||||| |||| || | |||| ||||||||||| ||   |||||||||||||||||||||||||||||||    
T  24509850 taatgcccaaatgtcaagcatttatagtgcattatatgaaccttcacatgagagaaaacacccatttgacttgaatcaatgttatggttcattaa 24509944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 2887520 - 2887586
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 389  Q
    ||||||| |||||||| ||| |||||||||| |||||||||||||||||| |||||||||| |||||    
T  2887520 actcatgcattagagagttgatggatgatttagagtaagagaatgagggagaattatgttggtaatg 2887586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 21936854 - 21936784
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| | |||||||| ||||| |||||||| ||| ||||||||||||||||||||    
T  21936854 actcatgcattagagaattgatagatgatttagagtatgagaatgatggagaattatgttgttaatgtaac 21936784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 2889242 - 2889308
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 389  Q
    ||||||| |||||||| ||| || ||||||| |||||||||||||||||| |||||||||| |||||    
T  2889242 actcatgcattagagagttgatgaatgatttagagtaagagaatgagggagaattatgttggtaatg 2889308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 11183340 - 11183270
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| | |||||||| ||||||||||||||| || ||||||||| ||| ||||||    
T  11183340 actcatgcattagagaattgattgatgatttagagtaagagaatgagagagaattatgttattattgtaac 11183270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 24509741 - 24509803
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    |||||||||||| ||||||||||  ||||| ||||||| ||| ||||||||||||||||||||    
T  24509741 attagagaattgatggatgatttaaagtaaaagaatgatggagaattatgttgttaatgtaac 24509803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 21275803 - 21275873
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  21275803 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 21275873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 21275923 - 21276021
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  21275923 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 21276021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 391
Target Start/End: Original strand, 21937600 - 21937668
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgta 391  Q
    ||||||| ||| |||||||| |||||| ||| || ||||||| ||| ||| ||||||||||||||||||    
T  21937600 actcatgcatttgagaattgatggatgttttagaataagagagtgatggaaaattatgttgttaatgta 21937668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 20752292 - 20752222
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| || ||||||||| ||||||| ||  ||||||||||||  | | ||||||||||||||||||||    
T  20752292 actcatgcatcagagaattgatggatgacttatagtaagagaatggtgaagaattatgttgttaatgtaac 20752222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 422 - 526
Target Start/End: Original strand, 49784636 - 49784740
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcacg 521  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| |||  |||||||||||||||||||||| ||||||||||||     
T  49784636 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacactcatttgacttgaatcaatgttatgattcattaagcacc 49784735  T
Q  522 cattt 526  Q
    |||||    
T  49784736 cattt 49784740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 323 - 520
Target Start/End: Original strand, 29827454 - 29827651
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctc-caaat 421  Q
    ||||||| |||||||||||| || ||||||| |||||||||||||||||| ||||| ||| |||||| |||  ||||  ||||  ||| |  |  ||||     
T  29827454 actcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaattaggttattaatgcaacaaaattcttgtttatgttttttgtcaaac 29827553  T
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||| ||| |||||||| |||| |||| ||| ||||| |||| |||||| ||   |||||||||||||||||||||| ||||||||||||    
T  29827554 taatgcccaaatgccaagcatttataatgcattatatgac-tttcacatgatagaaaacacccctttgacttgaatcaatgttatgattcattaagcac 29827651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 18024320 - 18024252
Alignment:
Q  325 tcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||| |||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||    
T  18024320 tcatgcattagagaattgatgaatgatttagagtaagagaatgagggagaattatgttgttaatgtaac 18024252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 20891089 - 20891159
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| ||||||| |||||||||| |||||||||||| |||||||    
T  20891089 actcatgcattagagaattgatggatgatttagagtaagcgaatgagggagaattatgttgtttatgtaac 20891159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 323 - 390
Target Start/End: Complemental strand, 3187628 - 3187561
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgt 390  Q
    ||||||| |||| ||||||| | |||||||| |||||||||||||||||| |||||||||||||||||    
T  3187628 actcatgcattaaagaattgatagatgatttagagtaagagaatgagggagaattatgttgttaatgt 3187561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 4049958 - 4050056
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||||||    
T  4049958 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatgccatgattcattaagcac 4050056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 5458065 - 5457967
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||| ||| ||||||||||||    
T  5458065 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgtcatgattcattaagcac 5457967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 5458186 - 5458116
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  5458186 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 5458116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 5481542 - 5481444
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||| ||| ||||||||||||    
T  5481542 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctatttaacttgaatcaatgtcatgattcattaagcac 5481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 5481662 - 5481592
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  5481662 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 5481592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 6858229 - 6858159
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  6858229 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 6858159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 8458341 - 8458411
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  8458341 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 8458411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 8464780 - 8464850
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  8464780 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 8464850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 8464900 - 8464998
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||| ||| ||||||||||||    
T  8464900 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgtcatgattcattaagcac 8464998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 10584912 - 10584814
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||||||    
T  10584912 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatgccatgattcattaagcac 10584814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 49784526 - 49784592
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatg 389  Q
    |||||||||||||||||||| | ||||||||  ||||| ||||||||||  ||||||||||||||||    
T  49784526 actcatgaattagagaattgatagatgatttaaagtaaaagaatgagggggaattatgttgttaatg 49784592  T

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Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 18024241 - 18024177
Alignment:
Q  415 tccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaa 479  Q
    |||||||| ||| ||||||||||| ||||||||||||| |||| |||| |||| |||||||||||    
T  18024241 tccaaattgatgaccaaatgtcaagcatttatagtgcattatatgacccttcacatgagagaaaa 18024177  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 1302298 - 1302200
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  1302298 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 1302200  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 1302419 - 1302349
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  1302419 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 1302349  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 4049837 - 4049907
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  4049837 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 4049907  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 4055092 - 4055190
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  4055092 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 4055190  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 6853118 - 6853056
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  6853118 attagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 6853056  T

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Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10585032 - 10584962
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| |   ||||||||||||||||||||    
T  10585032 actcatgcattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaac 10584962  T

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Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 10591349 - 10591251
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  10591349 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 10591251  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10591469 - 10591399
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| |   ||||||||||||||||||||    
T  10591469 actcatgcattagagaattgatggatgatttagaataatagaatgatgaggaattatgttgttaatgtaac 10591399  T

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Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 10672992 - 10672894
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  10672992 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 10672894  T

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Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10673112 - 10673042
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  10673112 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 10673042  T

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Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 10678227 - 10678157
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  10678227 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 10678157  T

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Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 31076576 - 31076506
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  31076576 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 31076506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 31081681 - 31081611
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  31081681 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 31081611  T

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Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 33702653 - 33702555
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  33702653 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 33702555  T

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Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 33702774 - 33702704
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  33702774 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 33702704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 33703329 - 33703399
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  33703329 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 33703399  T

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Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 4054971 - 4055041
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||| ||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  4054971 actcatgcattaaagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 4055041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 6853006 - 6852908
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||| ||||||    
T  6853006 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcatcaagcac 6852908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 6858109 - 6858011
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||| ||||||    
T  6858109 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaatcacctctttaacttgaatcaatgccatgattcatcaagcac 6858011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 516
Target Start/End: Original strand, 8458470 - 8458556
Alignment:
Q  430 aaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    ||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||    
T  8458470 aaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatgccatgattcattaa 8458556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 31076456 - 31076358
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| |||||||| |||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  31076456 taatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 31076358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 31081561 - 31081463
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| |||||||| |||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  31081561 taatgcccaaatgtcaagcatttataatgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 31081463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 422 - 478
Target Start/End: Original strand, 33703450 - 33703506
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaa 478  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||    
T  33703450 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaa 33703506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 323 - 516
Target Start/End: Original strand, 716297 - 716498
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatttctgttgttgtgtcctc------ 416  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||| ||| |||||||||||||| | | |  ||||  ||||  ||| | ||           
T  716297 actcatgcattagagaattgatggatgatttagagtaagagaatgaaggagaattatgttgttaaagaagcaaaattcttgtttatgttttctgttgtca 716396  T
Q  417 --caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcatt 514  Q
      || | ||||| ||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| |    |||||||||||||||||||| ||| ||||    
T  716397 gtcacactaatgcccaaatgccaaacatttatagtgcattatatgacctttcatatgagagaaaacatccctttgacttgaatcaatgttacggtccatt 716496  T
Q  515 aa 516  Q
    ||    
T  716497 aa 716498  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 422 - 518
Target Start/End: Original strand, 42780323 - 42780419
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagc 518  Q
    ||||| |||| |||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   |||||||||||||||||||||||||||||||||    
T  42780323 taatgcccaactgtcaatcatttatagtgcattatatgactcttcacatgagagaaaacacccctttgacttgaatcaatgttatggttcattaagc 42780419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 323 - 520
Target Start/End: Complemental strand, 30283615 - 30283406
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaacggaatt----------tctgtt--gttgt 410  Q
    ||||||| |||||||||||| | |||||||| ||||||||||| || ||| ||||||||||||||||||||  ||||          | ||||  |||||    
T  30283615 actcatgcattagagaattgattgatgatttagagtaagagaaggatggagaattatgttgttaatgtaacaaaattctgtccaaattgtgtttagttgt 30283516  T
Q  411 gtcctccaaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggtt 510  Q
    ||  |   || ||||| ||||||| ||||||||||||||||| |||| |||  |||| |||| |||||| ||   ||| |||||||||||| ||||||||    
T  30283515 gtgttttcaactaatgcccaaatgccaaacatttatagtgcattatatgactcttcacatgaaagaaaacacccctttaacttgaatcaatattatggtt 30283416  T
Q  511 cattaagcac 520  Q
    ||||||||||    
T  30283415 cattaagcac 30283406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 520
Target Start/End: Complemental strand, 20892408 - 20892306
Alignment:
Q  417 caaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    |||| ||||| |||||||||||  |||||||||||| |||| |||  |||| | ||||||||| |||  ||||| ||||||||||||| |||||||||||    
T  20892408 caaactaatgcccaaatgtcaagtatttatagtgcattatatgactcttcacacgagagaaaacactcatttgatttgaatcaatgtt-tggttcattaa 20892310  T
Q  517 gcac 520  Q
    ||||    
T  20892309 gcac 20892306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 14917556 - 14917486
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  14917556 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 14917486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Original strand, 45120537 - 45120635
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||| ||| ||||||||||||    
T  45120537 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgtcatgattcattaagcac 45120635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 14917436 - 14917338
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaata-ctattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| | ||| ||| |||||||||||||  ||| ||||||||||||    
T  14917436 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacagcta-tttaacttgaatcaatgccatgattcattaagcac 14917338  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 16284467 - 16284534
Alignment:
Q  323 actcatgaattagagaattggtggatgatttt-gagtaagagaatgagggataattatgttgttaatg 389  Q
    ||||||| |||||||| ||| || |||||||| |||||||||||||||||| |||||| |||||||||    
T  16284467 actcatgcattagagagttgatgaatgattttagagtaagagaatgagggagaattatattgttaatg 16284534  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 17720580 - 17720482
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||  ||   ||| |||||||||||||  ||| ||||||||||||    
T  17720580 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaagcacctctttaacttgaatcaatgccatgattcattaagcac 17720482  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Complemental strand, 17720700 - 17720630
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||  | | ||||||||||||||||||||    
T  17720700 actcatgcattagagaattgatggatgatttagaataatagaatggtgaagaattatgttgttaatgtaac 17720630  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 393
Target Start/End: Original strand, 45120416 - 45120486
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    ||||||| ||| |||||||| |||||||||| || ||| ||||||| | | ||||||||||||||||||||    
T  45120416 actcatgcattggagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaac 45120486  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 367
Target Start/End: Original strand, 42780214 - 42780258
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatg 367  Q
    ||||||| |||||||||||| |||||||||| |||||||||||||    
T  42780214 actcatgcattagagaattgatggatgatttagagtaagagaatg 42780258  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 520
Target Start/End: Original strand, 42780450 - 42780480
Alignment:
Q  490 acttgaatcaatgttatggttcattaagcac 520  Q
    |||||||||||||||||||||||||||||||    
T  42780450 acttgaatcaatgttatggttcattaagcac 42780480  T

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Target: scaffold0006 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 441 - 517
Target Start/End: Original strand, 144239 - 144315
Alignment:
Q  441 atttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaag 517  Q
    |||||||||||| |||| |||| |||| ||||||||||| ||   ||||||||||||||||||||||||||||||||    
T  144239 atttatagtgcattatatgacccttcacatgagagaaaacacccctttgacttgaatcaatgttatggttcattaag 144315  T

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Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 144126 - 144194
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagt--aagagaatgagggataattatgttgttaatg 389  Q
    ||||||| |||||||||||  |||||||||| |||   |||||||||||||| ||||||||||||||||    
T  144126 actcatgcattagagaattaatggatgatttagagagcaagagaatgagggagaattatgttgttaatg 144194  T

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Target: scaffold0223 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 2073 - 1975
Alignment:
Q  422 taatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaagcac 520  Q
    ||||| ||||||||||| ||||||||||||| |||| |||  |||| ||||||||||| ||   ||| |||||||||||||  ||| ||||||||||||    
T  2073 taatgcccaaatgtcaagcatttatagtgcattatatgactcttcacatgagagaaaacacctctttaacttgaatcaatgccatgattcattaagcac 1975  T

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Target: scaffold0223; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 323 - 392
Target Start/End: Complemental strand, 2193 - 2124
Alignment:
Q  323 actcatgaattagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaa 392  Q
    ||||||| |||||||||||| |||||||||| || ||| ||||||| | | |||||||||||||||||||    
T  2193 actcatgcattagagaattgatggatgatttagaataatagaatgatgaagaattatgttgttaatgtaa 2124  T

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Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 331 - 393
Target Start/End: Original strand, 173396 - 173458
Alignment:
Q  331 attagagaattggtggatgattttgagtaagagaatgagggataattatgttgttaatgtaac 393  Q
    |||||||||||| |||||||||| |||||||||||| ||| | |||||||||||| |||||||    
T  173396 attagagaattgatggatgatttagagtaagagaattaggaagaattatgttgttgatgtaac 173458  T

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Target: scaffold0005; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 418 - 516
Target Start/End: Original strand, 173489 - 173587
Alignment:
Q  418 aaattaatgtccaaatgtcaaacatttatagtgcagtatacgacctttcagatgagagaaaatactattttgacttgaatcaatgttatggttcattaa 516  Q
    |||||||||  ||||| |||||||||||||| ||| |||| |||| |||| |||| |||||| ||   ||||||||||||||||| || ||||||||||    
T  173489 aaattaatgcacaaatatcaaacatttatagcgcattatatgacccttcacatgatagaaaacacccatttgacttgaatcaatgctaaggttcattaa 173587  T

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