View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13138_low_7 (Length: 521)

Name: NF13138_low_7
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13138_low_7
NF13138_low_7
[»] chr5 (6 HSPs)
chr5 (21-290)||(20426307-20426575)
chr5 (24-146)||(20432010-20432131)
chr5 (369-510)||(20426082-20426228)
chr5 (92-146)||(20431768-20431822)
chr5 (92-146)||(20431888-20431942)
chr5 (207-289)||(20431651-20431736)
[»] chr4 (6 HSPs)
chr4 (21-290)||(5319055-5319326)
chr4 (24-146)||(5327921-5328042)
chr4 (369-424)||(5318921-5318976)
chr4 (92-146)||(5327798-5327852)
chr4 (442-503)||(38767029-38767090)
chr4 (441-495)||(5318843-5318897)
[»] chr1 (2 HSPs)
chr1 (441-495)||(45701341-45701395)
chr1 (441-495)||(51046155-51046209)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 20426575 - 20426307
Alignment:
Q  21 tgtcacattcaaagcaaagatgaatcgtcatggataattcttaggcaaacaataataagacgcaaagaacggacgatttgccggcatataatttccatca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  20426575 tgtcacattcaaagcaaagatgaatcgtcatggataattcttaggcaaacaataataagacgcaaagacaggacgatttgccggcatataatttccatca 20426476  T
Q  121 aatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactctttnnnnnnnnnntcattttctagacaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||    
T  20426475 aatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactcttt-caaaaaaaatcattttctagacaaa 20426377  T
Q  221 actttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426376 actttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg 20426307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 20432131 - 20432010
Alignment:
Q  24 cacattcaaagcaaagatgaatcgtcatggataattcttaggcaaacaataataagacgcaaagaacggacgatttgccggcatataatttccatcaaat 123  Q
    |||||||||||||   |||||||||||||||||||||||| ||||| |||| ||||| |||| || ||||||||||||||||||| |||||  |||||||    
T  20432131 cacattcaaagcaggcatgaatcgtcatggataattcttaagcaaa-aatactaagaagcaaggaccggacgatttgccggcatacaatttgtatcaaat 20432033  T
Q  124 atatagcaaatatatcgtcaaaa 146  Q
    |||||||||||||||||||||||    
T  20432032 atatagcaaatatatcgtcaaaa 20432010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 369 - 510
Target Start/End: Complemental strand, 20426228 - 20426082
Alignment:
Q  369 gttcgattcaaaagtattagtattgaaagtaaattcataatttgtttgtgaatgtgnnnnnnnnnnnn-----gtgctggtcggagttcgaagtccaaac 463  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||                 ||| |||||||  ||||||| ||  ||    
T  20426228 gttcaattcaaaagtattaggattgaaagtaaattcagaatttgtttgtgaatgtgtttttttttttttttttgtggtggtcgggattcgaagcccggac 20426129  T
Q  464 cttacattttttatgcattgatcctaccaactaatttaaattcatga 510  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  20426128 cttacattttttatgcattgttcctaccaactaatttaaattcatga 20426082  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 20431822 - 20431768
Alignment:
Q  92 gacgatttgccggcatataatttccatcaaatatatagcaaatatatcgtcaaaa 146  Q
    |||||||| |||||||| |||||  ||||||||||||||||||||||||||||||    
T  20431822 gacgattttccggcatacaatttgtatcaaatatatagcaaatatatcgtcaaaa 20431768  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 20431942 - 20431888
Alignment:
Q  92 gacgatttgccggcatataatttccatcaaatatatagcaaatatatcgtcaaaa 146  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||| ||||||||    
T  20431942 gacgatttgccggcatacaatttgtatcaaatatatagcaaatataccgtcaaaa 20431888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 289
Target Start/End: Complemental strand, 20431736 - 20431651
Alignment:
Q  207 attttctagacaaaactttaattttc-aatttatttgaattaaaaatatat-taag--aatattattaaatgaaatatgtccttttt 289  Q
    ||||||||||||||| || ||||||  |||||||||||| | ||||||||| ||||  ||||| |||||||||||||||||||||||    
T  20431736 attttctagacaaaatttaaattttttaatttatttgaactgaaaatatatataaggcaatat-attaaatgaaatatgtccttttt 20431651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 290
Target Start/End: Complemental strand, 5319326 - 5319055
Alignment:
Q  21 tgtcacattcaaagcaaagatgaatcgtcatggataattcttaggcaaacaataataagacgcaaagaacggacgatttgccggcatataatttccatca 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5319326 tgtcacattcaaagcaaagatgaatcgtcatggataattcttaggcaaacaataataagacgcaaagaacggacgatttgccggcatataatttccatca 5319227  T
Q  121 aatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactcttt--nnnnnnnnnntcattttctagaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||    
T  5319226 aatatatagcaaatatatcgtcaaaaagtttaaatattaaataggacaaaagtaaatcattttgtagactctttcaaaaaaaaaaatcattttctagaca 5319127  T
Q  219 aaactttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg 290  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5319126 aagctttaattttcaatttatttgaattaaaaatatattaagaatattattaaatgaaatatgtcctttttg 5319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 5328042 - 5327921
Alignment:
Q  24 cacattcaaagcaaagatgaatcgtcatggataattcttaggcaaacaataataagacgcaaagaacggacgatttgccggcatataatttccatcaaat 123  Q
    ||||||||||||||| |||||||||||||||||||||||| | ||| |||| ||||| |||| ||  ||||||||| |||||||| |||||  |||||||    
T  5328042 cacattcaaagcaaacatgaatcgtcatggataattcttaagaaaa-aatactaagaagcaaggataggacgatttcccggcatacaatttgtatcaaat 5327944  T
Q  124 atatagcaaatatatcgtcaaaa 146  Q
    |||||||||||||||||||||||    
T  5327943 atatagcaaatatatcgtcaaaa 5327921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 369 - 424
Target Start/End: Complemental strand, 5318976 - 5318921
Alignment:
Q  369 gttcgattcaaaagtattagtattgaaagtaaattcataatttgtttgtgaatgtg 424  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5318976 gttcgattcaaatgtattagtattgaaagtaaattcataatttgtttgtgaatgtg 5318921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 92 - 146
Target Start/End: Complemental strand, 5327852 - 5327798
Alignment:
Q  92 gacgatttgccggcatataatttccatcaaatatatagcaaatatatcgtcaaaa 146  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||| ||||||||    
T  5327852 gacgatttgccggcatacaatttgtatcaaatatatagcaaatataccgtcaaaa 5327798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 442 - 503
Target Start/End: Original strand, 38767029 - 38767090
Alignment:
Q  442 ggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaactaatttaaa 503  Q
    |||||||||| |||  ||||||||||||| | |||||||||| |||||||||||||||||||    
T  38767029 ggtcggagtttgaaccccaaaccttacatatgttatgcattgttcctaccaactaatttaaa 38767090  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 495
Target Start/End: Complemental strand, 5318897 - 5318843
Alignment:
Q  441 tggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaact 495  Q
    ||||||| |||||||| ||  ||||||||||||||||| |||| |||||||||||    
T  5318897 tggtcggggttcgaagcccggaccttacattttttatgtattgttcctaccaact 5318843  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 495
Target Start/End: Complemental strand, 45701395 - 45701341
Alignment:
Q  441 tggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaact 495  Q
    |||||||| |||||| |||| ||||||||| |||||||||||| || ||||||||    
T  45701395 tggtcggaattcgaactccagaccttacatattttatgcattgttcataccaact 45701341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 495
Target Start/End: Complemental strand, 51046209 - 51046155
Alignment:
Q  441 tggtcggagttcgaagtccaaaccttacattttttatgcattgatcctaccaact 495  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||| || ||||||||    
T  51046209 tggtcggagttcgaactccgaaccttacatattttatgtattgttcataccaact 51046155  T

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