View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_9 (Length: 496)
Name: NF13138_low_9
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 3e-77; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 262 - 471
Target Start/End: Complemental strand, 252392 - 252187
Alignment:
| Q |
262 |
gagtttgaataatcaa----ctagaaattataactcttcaatatatcaaacatgaaatcaactagaaaatcacctaataaggagatggcttttactccat |
357 |
Q |
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| T |
252392 |
gagtttgaataatcaatcatctagaaattataactcttcaatatttcaaacatcaaatcaacta-ataat-------taaggagatggcttttactccat |
252301 |
T |
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| Q |
358 |
atccattgatcaagtcacacaaatttatgtcgtttcatagaatattaaaacttgtaactgataaattgagtttaaacttagcaggaccataataatgcag |
457 |
Q |
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| T |
252300 |
atccattgatcaagtcacacaaatttatgtcatttcatagaatattaaaacttgtaactgataaattgagtttaaacttagcaggaccataataatgcag |
252201 |
T |
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| Q |
458 |
gcggtcaataacaa |
471 |
Q |
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| T |
252200 |
gcggtcaataacaa |
252187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 252733 - 252630
Alignment:
| Q |
149 |
taacctagactattcaccctctactcacactcatcaagtaatcaatgagcacatatcaaatatttgaaccctataatgtagcaaacttgcataatacaaa |
248 |
Q |
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| T |
252733 |
taacctagactattcaccctctactcacactcatcaagtaatcaatgagcacagatcaaatatttgacccctataatgtagcaaacttgcataatacaga |
252634 |
T |
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| Q |
249 |
tcaa |
252 |
Q |
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|||| |
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| T |
252633 |
tcaa |
252630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 45 - 120
Target Start/End: Complemental strand, 252802 - 252727
Alignment:
| Q |
45 |
gtatgtgctaaacctgatcacacgatcaaaggcggtgcagaacaaggttgaccattattcaaataattataaccta |
120 |
Q |
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| T |
252802 |
gtatgtgctaaacctgatcacacgatcaaaggcggtgcagaacaaggttgaccattattcaaataattataaccta |
252727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 246 - 410
Target Start/End: Original strand, 234405 - 234572
Alignment:
| Q |
246 |
aaatcaagtaaataatgagtttgaataatcaac--tagaaattataactcttcaatatatcaaacatgaa----atcaactagaaaatcacctaataagg |
339 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | | |||| || ||||||| ||||||| |
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| T |
234405 |
aaatcaag-aaataatgagtttgaataatcaactatagaaattataactcgtcaatatatcgaacatgtacggtaccaac-aggaaatcactgaataagg |
234502 |
T |
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| Q |
340 |
agatggcttttactccatatccattgatcaagtcacacaaatttatgtcgtttcatagaatattaaaactt |
410 |
Q |
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| T |
234503 |
agatagc-tttagtctatatccattgagcaaatcacacagttttaagttatttgatagaatattaaaactt |
234572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 378
Target Start/End: Original strand, 246068 - 246125
Alignment:
| Q |
321 |
agaaaatcacctaataaggagatggcttttactccatatccattgatcaagtcacaca |
378 |
Q |
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| T |
246068 |
agaaaatcactgaataaggagatggcttttaatccatatccatcgagcaagtcacaca |
246125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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