View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_16 (Length: 496)
Name: NF13139_high_16
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 132285 - 132772
Alignment:
| Q |
1 |
caacactcgattgttacttttttatgtgaattgtgtacatataacatgaactaatgcggatctttttggttaaagaattccatgtttcttcaccaacacc |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
132285 |
caacactcaattgttacttttttatgtgaattgtgtacatataacatgaactaatgcggatctttttggttaaagaattccatgttttttcaccaacacc |
132384 |
T |
|
| Q |
101 |
attgatggataaattgaatttctttgttaagctcactggcttacagttggttgcagaccttgcacataacataactataaaccctgtgggatgtcttttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132385 |
attgatggataaattgaatttctttgttaagctcactggcttacagttggttgcagaccttgcacataacataactataaaccctgtgggatgtcttttt |
132484 |
T |
|
| Q |
201 |
ctaattggtaacattttggccgacattgtaattttcacttgcaaaaccaggtgtggcaaggagagtcggatcataatactaaattaaagtttttagttga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132485 |
ctaattggtaacattttggccgacattgtaattttcacttgcaaaaccaggtgtggcaaggagagtcggatcataatactaaattaaagtttttagttga |
132584 |
T |
|
| Q |
301 |
atatatttgatatgttgttactaattctttgtttcagattgttggaatggagattgagatttttctgttttattaattattttttgctgcttatttctgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132585 |
atatatttgatatgttgttactaattctttgtttcagattgttggaatggagattgagatttttctgttttattaattattttttgctgcttatttctgt |
132684 |
T |
|
| Q |
401 |
aaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtcactaagtgatgatg |
488 |
Q |
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| T |
132685 |
aaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtcactaagtaatgatg |
132772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 348 - 474
Target Start/End: Original strand, 17648814 - 17648940
Alignment:
| Q |
348 |
tggagattgagatttttctgttttattaatta-ttttttgctgct-tatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattagg |
445 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| || | ||||||| | ||||||| | |||||| |||||||||| ||||||| | |||||||||||| |
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| T |
17648814 |
tggagattgatatttttctgttttgttaattacttgtgtgctgctgtttttctgtcataattagcttgttgcttg--tttaagttaatgtcataattaga |
17648911 |
T |
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| Q |
446 |
tagctgcttatttattaagtaaagtagtc |
474 |
Q |
| |
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| | |||||||| | || ||||| ||||| |
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| T |
17648912 |
ttgttgcttattaagtatgtaaaatagtc |
17648940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 14662319 - 14662415
Alignment:
| Q |
394 |
tttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtcactaagtgatgatgtc |
490 |
Q |
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| T |
14662319 |
tttctgtcataattaaagtgttgcttgtttatgtataagtgtcataattagatcgttgcttatttagtaagtaaaacagtccctaggtaatgatgtc |
14662415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 7231117 - 7231039
Alignment:
| Q |
394 |
tttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggtagctgcttatttattaagtaaagtagtc |
474 |
Q |
| |
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||||||| | |||||||||||||||||||| |||| |||||||||||||| | |||||||||||| |||||||||||||| |
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| T |
7231117 |
tttctgtcataattagattgttgcttgttt--aagttagtgtcataattagattgctgcttatttagtaagtaaagtagtc |
7231039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 48025313 - 48025193
Alignment:
| Q |
348 |
tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta |
447 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||| | ||||| ||||||| | ||||| | |||||||||||| | ||| |||||||||||| | |
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| T |
48025313 |
tggagattgatatttttctgttttgttaattattttctactgctgttttctgtcataattaaagtgttgcttgtttatgtataaatgtcataattagatt |
48025214 |
T |
|
| Q |
448 |
gctgcttatttattaagtaaa |
468 |
Q |
| |
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| |||||||||| |||||||| |
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| T |
48025213 |
gttgcttatttagtaagtaaa |
48025193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 490
Target Start/End: Complemental strand, 48027493 - 48027351
Alignment:
| Q |
348 |
tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta |
447 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||| |||| |||||| | |||| | |||||||||||| | |||||||||||||||| | |
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| T |
48027493 |
tggagattgatatttttctgttttgttaattattttttactgccgttttctgccataatttaagtgttgcttgtttatgtataagtgtcataattagatt |
48027394 |
T |
|
| Q |
448 |
gctgcttatttattaagtaaagtagtcactaagtgatgatgtc |
490 |
Q |
| |
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| |||||||||| |||||||| |||| ||| || |||||||| |
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| T |
48027393 |
gttgcttatttagtaagtaaaacagtccctaggtaatgatgtc |
48027351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 48024202 - 48024082
Alignment:
| Q |
348 |
tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta |
447 |
Q |
| |
|
|||||||||| |||||||| |||| ||||||||||| | ||||| ||||||| | ||||| | |||| ||||||| | |||||||||||||||| | |
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| T |
48024202 |
tggagattgatatttttctcttttgttaattattttctactgctgttttctgtcataattaaagtgttacttgtttatgtataagtgtcataattagatt |
48024103 |
T |
|
| Q |
448 |
gctgcttatttattaagtaaa |
468 |
Q |
| |
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| |||||||||| |||||||| |
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| T |
48024102 |
gttgcttatttagtaagtaaa |
48024082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 48024753 - 48024633
Alignment:
| Q |
348 |
tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta |
447 |
Q |
| |
|
|||||||||| |||||| |||||| ||||||||||| | ||||| ||||||| | ||||| | |||||| ||||| | |||||||||||||||| | |
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|
| T |
48024753 |
tggagattgatatttttatgttttgttaattattttctactgctgttttctgtcataattaaaatgttgcatgtttatgtataagtgtcataattagatt |
48024654 |
T |
|
| Q |
448 |
gctgcttatttattaagtaaa |
468 |
Q |
| |
|
| |||||||||| |||||||| |
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|
| T |
48024653 |
gttgcttatttagtaagtaaa |
48024633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 348 - 474
Target Start/End: Complemental strand, 13111318 - 13111192
Alignment:
| Q |
348 |
tggagattgagatttttctgttttattaattattttttgctgcttatttctgtaaaaattagattgttgcttgtttttaagtaagtgtcataattaggta |
447 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| ||||| ||||| ||||||| | ||||| | |||||||||||| | ||||| ||||||||| | |
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| T |
13111318 |
tggagattgatatttttctgttttgttaattactttttactgctgttttctgtcataattaaagtgttgcttgtttatgtagaagtgccataattagatt |
13111219 |
T |
|
| Q |
448 |
gctgcttatttattaagtaaagtagtc |
474 |
Q |
| |
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| |||||||||| |||||||| ||||| |
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|
| T |
13111218 |
gttgcttatttagtaagtaaaatagtc |
13111192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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