View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_2 (Length: 887)
Name: NF13139_high_2
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 47684374 - 47684167
Alignment:
| Q |
19 |
caaaggggaagaaaacagagacaacatgacttgctgaaggaaacatagacgagattgaaaggaaacagagatgacatgggtcagatcgaaatgagaaaaa |
118 |
Q |
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| T |
47684374 |
caaaggggaagaaaacagagacaacatgactagctgaaggaaacgtagacgagattgaaaggaaacagagatgacatgggtcagatcgaaacgagaaaaa |
47684275 |
T |
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| Q |
119 |
cattaaaacttgtgtaatacaaatcggaaagaaccatggacacctcgaaagtaaaggagcggtggacaggtcggaagcaaacgaagccatggagagatga |
218 |
Q |
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| T |
47684274 |
cattaaaacttgtgtaatacaaatcggaaagaaccatggacacatcgaaagtaaaggagcggtggacaggtcggaaggaaacgaagccatggagagatga |
47684175 |
T |
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| Q |
219 |
gaagaaga |
226 |
Q |
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|||||||| |
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| T |
47684174 |
gaagaaga |
47684167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 101
Target Start/End: Original strand, 28579517 - 28579596
Alignment:
| Q |
22 |
aggggaagaaaacagagacaacatgacttgctgaaggaaacatagacgagattgaaaggaaacagagatgacatgggtca |
101 |
Q |
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|||||||| ||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
28579517 |
aggggaaggaaacagagacaacatgactaacataaggaaacatagacgagatcgaaaggaaacagagataacatgggtca |
28579596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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