View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_22 (Length: 450)
Name: NF13139_high_22
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 4 - 439
Target Start/End: Original strand, 28342975 - 28343423
Alignment:
| Q |
4 |
cattatcatcatgatcaataagtagttcatatattgatttcaacatatacacaaatcacattgaaagaacataacccccatttggatacacaattcaaca |
103 |
Q |
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| T |
28342975 |
cattatcatcatgatcaataagtagttcatatattcatttcaacatatacacaaatcacattgaaagaacataacccccatttggatacacaattcaaca |
28343074 |
T |
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| Q |
104 |
tagcatgttattcacaaataaagcatataaccaacctacataattaagtaaaaaccgtgttgctagatagtcccttaattgccccgacggcgttttaaaa |
203 |
Q |
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| T |
28343075 |
tagcatgttattcacaaataaaacatataaccaacctacataattaagtaaaaaccatgttgctagatagtcccttaattgccccgacggcgttttaaaa |
28343174 |
T |
|
| Q |
204 |
cgcaagacaacttatgctacacgagtaaatccaattttgattgttactatcattacttcttgattttatgagtaaat----------cca--at-ttaga |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||||| |
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| T |
28343175 |
cgcaagacaacttatgctacacgagtaaatccaattttgattgttactatcattacttcttgattttatgagcaaatattacaacgaccacgatcttaga |
28343274 |
T |
|
| Q |
291 |
ttctccttccaattcnnnnnnnnnnnngagtaattaggatataaccgtttcagtgttttattcaactcctaacaggccagatcatacgtagtttccttag |
390 |
Q |
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|||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28343275 |
ttctccctccaattcaaaatagaaaaagagtaattagaatataaccgtttcagtgttttattcaactcctaacaggccagatcatacgtagtttccttag |
28343374 |
T |
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| Q |
391 |
aacttatttcaattaatttcttaacactttacatacttcaatcaaccta |
439 |
Q |
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| T |
28343375 |
aacttatttcaattaatttcttaacactttacatacttcaatcaaccta |
28343423 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 432
Target Start/End: Complemental strand, 568891 - 568862
Alignment:
| Q |
403 |
ttaatttcttaacactttacatacttcaat |
432 |
Q |
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| T |
568891 |
ttaatttcttaacactttacatacttcaat |
568862 |
T |
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