View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_25 (Length: 421)
Name: NF13139_high_25
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_25 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Original strand, 40221269 - 40221661
Alignment:
| Q |
19 |
aatgcaactttgtgtccttgttgccagtaacatgatttgttcttcagcttgtactttagcagcagcacaacaagtagatggcaatgcagcagaatttgtg |
118 |
Q |
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| T |
40221269 |
aatgcaactttgtgtccttgttgccagtaacatgatttgttcttcagcttgtactttagcagcagcacaacaagtagatggcaatgcagcagaatttgtg |
40221368 |
T |
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| Q |
119 |
aatggttttaagggacaagatcttgagatggtggtagaagcagaacgtgtgagattcttgtttgtcatgtccacttgtgctgtgaatagagaatacactg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221369 |
aatggttttaagggacaagatcttgagatggtggtagaagcagaacgtgtgagattcttgtttgtcatgtccacttgtgctgtgaatagagaatacactg |
40221468 |
T |
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| Q |
219 |
gtctatggtcagagaattttgactctcctctaacatacattttctgatttagtccttctcctttccatagaattctatcacaccttcagcaaccaaaaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221469 |
gtctatggtcagagaattttgactctcctctaacatacattttctgatttagtccttctcctttccatagaattctatcacaccttcagcaaccaaaaaa |
40221568 |
T |
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| Q |
319 |
tattaattaaaagatatcaaattttaatagctttcgtaatgtgagttgaatcataaaaatcataccaagcaggagtgcgtcgtttttcctttg |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221569 |
tattaattaaaagatatcaaattttaatagctttcgtaatgtgagttgaatcataaaaatcataccaagcaggagtgcgtcgtttttcctttg |
40221661 |
T |
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