View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_28 (Length: 379)
Name: NF13139_high_28
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Complemental strand, 26585001 - 26584649
Alignment:
| Q |
17 |
atacactatgtctaaaatgaatataagtgtctcaaaactcaacacattcattttctcaattgtttttgtcaaactaatcctaatcaggtcatcgtctcaa |
116 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26585001 |
atacagtatgtctaaaatgaatatgagtgtctcaaaactcaacacattcattttctcaattgtttttgtcaaactaatactaatcaggtcatcgtctcaa |
26584902 |
T |
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| Q |
117 |
ccataagaatgacgagaaccatgaacttctacttctaaaaagagttgtcatttgtcactaaagtttcgagtaattcttaagtactattccaatgtgaacc |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26584901 |
ccataagaatgaggagaaccatgaacttctacttctaaaaagagttgtcgtttgtcactaaagtttcgagtaattcttaagtactattccaatgtgaacc |
26584802 |
T |
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| Q |
217 |
atctatcatttttaaggtggtacacagtagaatccgctttgacttaaatcaaaatataaggaagaaagacaaggcagaagacaatgcaattgtatatctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26584801 |
atctatcatttttaaggtggtacacagtagaatccggcttgacttaaaccaaaatataaggaagaaagacaaggcagaagacaatgcaattgtatatctt |
26584702 |
T |
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| Q |
317 |
tcattgcatttttgtatttaattggagaaattatactcaccttcttagttctt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26584701 |
tcattgcatttttgtatttaattggagaaattatactcaccttcttagttctt |
26584649 |
T |
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