View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13139_high_32 (Length: 333)
Name: NF13139_high_32
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 47804873 - 47804559
Alignment:
| Q |
1 |
agctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatcatttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47804873 |
agctttaggcatgaaggaaacttgcaagagtattccattagacatttgatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcatttaaag |
47804774 |
T |
|
| Q |
101 |
tacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagatggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47804773 |
tacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagatggta |
47804674 |
T |
|
| Q |
201 |
tgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgataactcgttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
47804673 |
tgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgataactcgatc |
47804574 |
T |
|
| Q |
301 |
accaagctttgtttt |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47804573 |
accaagctttgtttt |
47804559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 47807435 - 47807139
Alignment:
| Q |
1 |
agctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacgagagaaatgatcaatcatttaaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47807435 |
agctttaggcatgaaggaaacttgcaagagtattccattagacatttcatcatgttgaacacctaaaagttaaacaagagaaatgatcaatcatttaaag |
47807336 |
T |
|
| Q |
101 |
tacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagatggta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47807335 |
tacatacatagaaccaaatattgagaaatataaagtagcgttaaaaagctagcaagatctatatgcaatttattatacctatgactctcacaagatggta |
47807236 |
T |
|
| Q |
201 |
tgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaaccaccctactcgcaaagctttcaggttgtttcgataactcg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47807235 |
tgaattccttagcttatgatcattggaatctactctggctctaacaaaagttccaatcaccctactcgcaaagctttcaggctgtttcgataactcg |
47807139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University