View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_33 (Length: 313)
Name: NF13139_high_33
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_33 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 4771420 - 4771683
Alignment:
| Q |
23 |
tactttttgcgtttggctttggtgatcttctaatgattggtggaactctttgagtaccgttactatctcacatctatgctttgtttacacttggaacacc |
122 |
Q |
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| T |
4771420 |
tactttttgcgtttggccttggtgatcttctaatgattggtggaactctttgagtaccgttactatctcgcatctttgctttgtttacacttggaacacc |
4771519 |
T |
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| Q |
123 |
ttccctttctttaccggtcaccacaaatgggggcatgcgcattataaagggggttcaaattgtaaattacgaaaataaaagggctattttcgggttttca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
4771520 |
ttccctttctttaccggtcaccacaaatgggggcatgcacattataaagggggttcaaattctaaattacgaaaataaaagggctattttcgagttttca |
4771619 |
T |
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| Q |
223 |
tg-ggggtgcaagaggcttttgagggtggaaaaagaatttcacggttatttatatactttattaat |
287 |
Q |
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|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4771620 |
tgaggggtgcaagaggc--ttgagggtggaaaaagaatttcacggttatttatatactttattaat |
4771683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 1187010 - 1186976
Alignment:
| Q |
279 |
tttattaatggcttaattgcacttttggcccccta |
313 |
Q |
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| T |
1187010 |
tttattaatggcttaattgcacttttggcccccta |
1186976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Complemental strand, 9592448 - 9592419
Alignment:
| Q |
284 |
taatggcttaattgcacttttggcccccta |
313 |
Q |
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| T |
9592448 |
taatggcttaattgcacttttggcccccta |
9592419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 11159740 - 11159708
Alignment:
| Q |
281 |
tattaatggcttaattgcacttttggcccccta |
313 |
Q |
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| T |
11159740 |
tattaatggcttaattgcacttttggaccccta |
11159708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 38731262 - 38731304
Alignment:
| Q |
271 |
ttatatactttattaatggcttaattgcacttttggcccccta |
313 |
Q |
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||||||| || ||||||||||||||||||||||||| |||||| |
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| T |
38731262 |
ttatatatttaattaatggcttaattgcacttttggaccccta |
38731304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 32661751 - 32661723
Alignment:
| Q |
285 |
aatggcttaattgcacttttggcccccta |
313 |
Q |
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| T |
32661751 |
aatggcttaattgcacttttggcccccta |
32661723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 34470026 - 34470054
Alignment:
| Q |
285 |
aatggcttaattgcacttttggcccccta |
313 |
Q |
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| T |
34470026 |
aatggcttaattgcacttttggcccccta |
34470054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 47088913 - 47088954
Alignment:
| Q |
110 |
cacttggaacaccttccctttctttaccggtcaccacaaatg |
151 |
Q |
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| T |
47088913 |
cacttggaacgccttccctttctttaccagtcatcacaaatg |
47088954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 929204 - 929232
Alignment:
| Q |
285 |
aatggcttaattgcacttttggcccccta |
313 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
929204 |
aatggcttaattgcacttttggcccccta |
929232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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