View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_44 (Length: 222)
Name: NF13139_high_44
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_44 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 31988094 - 31988296
Alignment:
| Q |
1 |
ggaacaagaaaatagnnnnnnncccaagctattacagatatagcagcaaacatgaaaaatgcaccacctattgtgagtgctttatagattgaaatgaaac |
100 |
Q |
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| T |
31988094 |
ggaacaagaaaatagaaaaaaacccaagctattacagatatagcagcaaacatgaaaaatgcaccacctattgtgagtgctttatagattgaaataaaac |
31988193 |
T |
|
| Q |
101 |
tcatggaaacagcagcattcatagacctattcacagcaactccaatactaaccccttgtgcccttaacttcaaaggaaatatctctgaaccatagagcca |
200 |
Q |
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| T |
31988194 |
tcatggaaacagcagcattcatagacctattcacagcaactccaatactaaccccttgtgcccttaacttcaaaggaaatatctctgaaccatagagcca |
31988293 |
T |
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| Q |
201 |
agt |
203 |
Q |
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||| |
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| T |
31988294 |
agt |
31988296 |
T |
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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 203
Target Start/End: Original strand, 33161286 - 33161465
Alignment:
| Q |
24 |
ccaagctattacagatatagcagcaaacatgaaaaatgcaccacctattgtgagtgctttatagattgaaatgaaactcatggaaacagcagcattcata |
123 |
Q |
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|||||||| ||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| ||| |||| |||||| |||||||||| |
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| T |
33161286 |
ccaagctaaaacagatataccagcaaacatgaaaaaacttccacctattgtgatagctttatagattgaaataaaagtcatagaaacaacagcattcatg |
33161385 |
T |
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| Q |
124 |
gacctattcacagcaactccaatactaaccccttgtgcccttaacttcaaaggaaatatctctgaaccatagagccaagt |
203 |
Q |
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| T |
33161386 |
gttctattcacagcaactccaatacttgctccttgtgccctcaacttcaaaggaaatatctctgaactataaacccaagt |
33161465 |
T |
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