View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_high_7 (Length: 552)
Name: NF13139_high_7
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 69 - 552
Target Start/End: Original strand, 31987613 - 31988093
Alignment:
| Q |
69 |
atatggtcacaagactaaataaatattttgtcaaaaaacaaagtttgggcacacacataaagaagtattttttgtaattataaaaggaaaattgatnnnn |
168 |
Q |
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| T |
31987613 |
atatggtcacaagactaaataaatattttgtcaaaaaataaagtttgggcacacacataaagaagtattttttgtaataataaaaggaaaattgataaaa |
31987712 |
T |
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| Q |
169 |
nnnnnntgattaaatattttgaagataatttctttatatgtgtgtgtcaaatactatttatttggccttatgcctatagaaaaatatcatttgtacatca |
268 |
Q |
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| T |
31987713 |
aaaaa-tgattaaatattttgaagataatttctttatatgtgtgt--cagataatatttatttggtcttatgcccatagaaaaatatcatttgtacatca |
31987809 |
T |
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| Q |
269 |
catggatagacaatctagttttgttaataagaaaagtaaaaacaatattgaaataagtctaaaacgataaacacaccaagtgattaaattacttcacaaa |
368 |
Q |
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| T |
31987810 |
catggatacacaatctagttttgttaataagaaaagtaaaaacaatattgaaataagtctaaaacgataaacacaccaagtgattaaattacttcacaaa |
31987909 |
T |
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| Q |
369 |
caacaacaaaaagagatcaatattttgaggaaaaagaacataatgtcatgtaaagattttttacatttttgaacttactaaggtctattgtgttggatat |
468 |
Q |
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| T |
31987910 |
caacaacaaaaagagatcaatattttgaggaaaaagaacataatgtcatgtaaagattttttacatttttgaacttactaaggtctattgtgttggatat |
31988009 |
T |
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| Q |
469 |
gtttccatggcaacacttttaccacttttannnnnnnnggtaaaaagagtctccatctcctccaaagtcttacatttagtttca |
552 |
Q |
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| T |
31988010 |
gtttccatggcaacacttttaccacttttattttttttggtaaaaagagtctccatctcctccaaagtcttacctttagtttca |
31988093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 93
Target Start/End: Original strand, 29189645 - 29189676
Alignment:
| Q |
62 |
aattctaatatggtcacaagactaaataaata |
93 |
Q |
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| T |
29189645 |
aattctaatatggtcacaagactaaataaata |
29189676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 26764575 - 26764511
Alignment:
| Q |
177 |
attaaatattttgaagataatttctttatatgtgtgtgt-caaatactatttatttggccttatg |
240 |
Q |
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| T |
26764575 |
attaaatattttaaagataatatcttcatgtgagtgtgtccaaagactatttatttggtcttatg |
26764511 |
T |
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