View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13139_high_8 (Length: 544)
Name: NF13139_high_8
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_high_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 6039561 - 6040086
Alignment:
| Q |
1 |
gggggcggcaaacaaatttatttgttcacctctatccaaattcatcttcttctttttt-gttactctatccaaattcatctacttctattgtcttgaacg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6039561 |
gggggcggcaaacaaatttatttgttcacctctatccaaattcatcttcttttttttttgttactctatccaaattcatctacttctattgtcttgaacg |
6039660 |
T |
|
| Q |
100 |
ataaaattctagtagattggatataaacataaaccatataacataaagcaactataagtaatcgtgacattcaacgaaagcnnnnnnnttgaatattttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6039661 |
ataaaattctagtagattggatataaacataaaccatataacataaagcaactataagtaatcgtgacattcaacgaaagcaaaaaaattgaatattttt |
6039760 |
T |
|
| Q |
200 |
cttcaacttctagtggctcttgaaacaagttgcatataacaataacatagtacccctttctgcctcaatcttaatatattttttggtcaaacctcaatct |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6039761 |
cttcaatttctagtggctcttgaaacaagttgcatataacaataacatagtacccctttctgcctcaatcttaatatattttttggtcaaacctcaatat |
6039860 |
T |
|
| Q |
300 |
tcattctatgaatgagcaaaatatcatgcggcatgcaattgtggcaactagccacaaggttgttttttgcaagttgctagttagttgattgaatgcactc |
399 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6039861 |
tgattctatgaatgagcaaaatatcatccggcatgcaattgtggcaactagccacaaggttgttttttgcaagttgctagttagttgattgaatgcactc |
6039960 |
T |
|
| Q |
400 |
aatgttgagttgactgtgttattatatgtatagatccataatgattaaatgcttttcgtacgttttgttatatgtaccgacatattatatatgtgttcaa |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6039961 |
aatgttgagttgactgtgttattatatgtatagatccataatgattaaatgcttttcgtacgttttgttatatgtaccgacatattatatatgtgttcaa |
6040060 |
T |
|
| Q |
500 |
tggagtcctagctacaaaatggcttg |
525 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6040061 |
tggagtcctagctacaaaatggcttg |
6040086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University