View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13139_low_10 (Length: 537)
Name: NF13139_low_10
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 5 - 356
Target Start/End: Original strand, 10457772 - 10458126
Alignment:
| Q |
5 |
atcactatacaagatactgatactagtaataattttaaaaaatggaagtggttgaacgtaaacgtatgtgacagtgctgtgtcgatgttgcatatcggac |
104 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
10457772 |
atcactacacaagatactgatacttgtaataattttaaaaaatggaagtggttgaacgtaaacgtatgtgtcagtgctatgtcgatgttgcatatcggac |
10457871 |
T |
|
| Q |
105 |
atgcctgcaatctgaagtgtctgt--tgcatatatacttagcaagtatttaatttagatccttattgcatttt-ttaatggatcaataagggtacaactt |
201 |
Q |
| |
|
||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10457872 |
ttgcctgcaatctgaaatgtctatgatgcatatatagttagcaagtatttaatttagatcctaattgcatttttttaatggatcaataagggtacaactt |
10457971 |
T |
|
| Q |
202 |
tagcaagcatttccaaatctaaatctctaaaatctgcaaatatttctgtttttgcagatctgattttgttgacgattccatggtctaactgtaagttagc |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
10457972 |
aagcaagcatttccaaatctaaatctctaaaagctgcaaatatttttgttgttgcagatctgattttgttgatgattccatggtccaactgtaagttagc |
10458071 |
T |
|
| Q |
302 |
aagcaagactctgatgggaagactataacaccgaaaggatgacgcctggttaaca |
356 |
Q |
| |
|
| ||||| |||||||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
10458072 |
aggcaaggttctgatgggaagcctaaaacaccgaaataatgacgcctggttaaca |
10458126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 361 - 487
Target Start/End: Original strand, 10458168 - 10458294
Alignment:
| Q |
361 |
caatgggaaatatgtcaaaatttatcgtactttctcgttagaatagaaatatgtgatacttatagcagactttttactatgttagaggttgaatttggtt |
460 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10458168 |
caatgggaaatatgtcaaactttatcgtactttctcgttagaatagaaatatgtgatacttatagcagactttttactatgttagaggttgaatttggtt |
10458267 |
T |
|
| Q |
461 |
ttcctataaataatagaggtgtagatt |
487 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
10458268 |
ttcctaaaaataatagaggtgtagatt |
10458294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 33198372 - 33198337
Alignment:
| Q |
24 |
atactagtaataattttaaaaaatggaagtggttga |
59 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33198372 |
atactagtaataattttaaaaaatggaagtgattga |
33198337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 487
Target Start/End: Complemental strand, 26454126 - 26454071
Alignment:
| Q |
432 |
ttttactatgttagaggttgaatttggttttcctataaataatagaggtgtagatt |
487 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| |||||||| |||||| |||||||| |
|
|
| T |
26454126 |
ttttactgtgttataggttgaatttagtttttctataaatgatagagttgtagatt |
26454071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University