View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_11 (Length: 536)
Name: NF13139_low_11
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 5360513 - 5360205
Alignment:
| Q |
19 |
attagggactaatggtggtgataaaaatggattaggaggaaggttaaaagtatcaaggttaattacannnnnnncatctaaattttttgaagttttagtt |
118 |
Q |
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| T |
5360513 |
attagggactaatggtggtgataaaaatggattaggaggaaggttaaaagtatcaaggttaattacatttttttcatctaaattttttgaagttttagtt |
5360414 |
T |
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| Q |
119 |
gatttgtatttggattcttcactagtcattccactagggattagtggtgacaattcaggtggcaatattggtgtaagaatttcaggtactaaaggaactg |
218 |
Q |
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| T |
5360413 |
gatttgtatttggattcttcactagtcattccactagggattagtggtgacaattcaggtggcaatattggtgtaagaatttcaggtactaaaggaactg |
5360314 |
T |
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| Q |
219 |
gtggaaggaaaggaagaacaccactaggggggtttggatctcgaagtgggggtggaaaagaaggatcaattttgggaggaaatgaagnnnnnnncaaaga |
318 |
Q |
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| T |
5360313 |
gtggaaggaaaggaagaacaccactaggggggtttggatcttgaagtgggggtggaaaagaaggatcaattttgggaggaaatgaagtttttttcaaaga |
5360214 |
T |
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| Q |
319 |
atcaagaag |
327 |
Q |
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| T |
5360213 |
atcaagaag |
5360205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 392 - 532
Target Start/End: Complemental strand, 5360140 - 5360000
Alignment:
| Q |
392 |
aatgagaaaaaccctgctgaaaatatgtgtagtccttgttttcttgattttaggtgaagtgatgaagatgaggctgctgaagctatagaacaaaatggtt |
491 |
Q |
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| T |
5360140 |
aatgagaaaaaccctgctgaaaaaatgtgtagtccttgttttcttgattttaggtgaagtgatgaagatgaggctgctgaagctatagaacaaaatggtt |
5360041 |
T |
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| Q |
492 |
cattgctgcttactaatttcactacacatcctttgcttctc |
532 |
Q |
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| T |
5360040 |
cattgctgcttactaatttcactacacaccctttgattctc |
5360000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 440 - 532
Target Start/End: Original strand, 5505862 - 5505954
Alignment:
| Q |
440 |
tttaggtgaagtgatgaagatgaggctgctgaagctatagaacaaaatggttcattgctgcttactaatttcactacacatcctttgcttctc |
532 |
Q |
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| T |
5505862 |
tttaggtgaagtgatgaagatgaggctgctgaggctatagaacaaaatggttcattgctgcttactaatttcactacacatcctttgattctc |
5505954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 5360834 - 5360672
Alignment:
| Q |
19 |
attagggactaatggtggtgataaaaatggattaggaggaaggttaaaagtatcaaggttaattacannnnnnncatctaa---------attttttgaa |
109 |
Q |
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| T |
5360834 |
attagggagtaatggtggtggaaaaaaaggattaggaggaaggttaaaggaatcaaggttagttgcttttttttcatctaatgattgaacattttttgta |
5360735 |
T |
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| Q |
110 |
gttttagttgatttgtatttggattcttcactagtcattccactagggattagtggtgacaat |
172 |
Q |
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| T |
5360734 |
gtttttgttgatttggatttggatgcatcactagtcattccatttgggactaatggtgacaat |
5360672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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