View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_13 (Length: 517)
Name: NF13139_low_13
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 50558396 - 50558893
Alignment:
| Q |
1 |
agcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgc |
100 |
Q |
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| T |
50558396 |
agcaaaaatttagggagagggttgctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgc |
50558495 |
T |
|
| Q |
101 |
agaaccatactcacacccaggagttggacaggcaccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaatttgataagc |
200 |
Q |
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| T |
50558496 |
agaaccatactcacactcaggagttggacaggtaccttccacaagccgatcacacaagaacctctcgcaggtatcgcagtaaagctgaaatttgataagc |
50558595 |
T |
|
| Q |
201 |
attttagtaaagcgtaataaagaacctttctgaaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaacacctgctccattg |
300 |
Q |
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| T |
50558596 |
attttagtaaagtgtaataaagaacctttctgaaattttcaactaaacaagagagaggaacaatgtcaaataaatagaaaattgaacacctgctccattg |
50558695 |
T |
|
| Q |
301 |
ttctctcggagatccatttgttatcaaatatcttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatcaaaact |
400 |
Q |
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| T |
50558696 |
ttctctcggagatccatttgttatcaaatatcttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatcaaaact |
50558795 |
T |
|
| Q |
401 |
tatatcaaaccaatcatagacctccttatgaatagcatggtatctacacaaaaacaccgagaaaagacgattattgaaattctgctttaggagtaagc |
498 |
Q |
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| T |
50558796 |
tatatcaaaccaatcgtagacctccttatgaatagcatggtatctacacaaaaaaaccgagaaaagacgattattgaaattctgctttaggagtaagc |
50558893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 446
Target Start/End: Original strand, 29773425 - 29773538
Alignment:
| Q |
333 |
ttttggaaaattgactggcaaatttcagtttgctcaggagaagaggttcgcccaaatttatcaaaacttatatcaaaccaatcatagacctccttatgaa |
432 |
Q |
| |
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|||| |||||||| ||||| | ||||||||||||||| ||||| || || ||||||| |||||| ||||||| |||||||| ||||| ||||| |||| |
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| T |
29773425 |
tttttgaaaattgcttggcacacttcagtttgctcaggggaagaagtacgtccaaattcatcaaagcttatattgaaccaatcgtagacttccttgtgaa |
29773524 |
T |
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| Q |
433 |
tagcatggtatcta |
446 |
Q |
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| T |
29773525 |
tagcatggtatcta |
29773538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 29773068 - 29773236
Alignment:
| Q |
25 |
ctaccttgcacctaggattcttcaactctgtaggattgagaagctttccacacttatcgcattggtcacctcgtgcagaaccatactcacacccaggagt |
124 |
Q |
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| T |
29773068 |
ctaccttgcacttgggaatcttcaattctgtcggatttagaaggttgccacagttctcacactgatcccctctggcagaatcatactcacaccctggaat |
29773167 |
T |
|
| Q |
125 |
tggacaggcaccttccacaagccgatcacacaagaacctctcgcatgtattgcagtaaagctgaaattt |
193 |
Q |
| |
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||| |||| ||| |||||||| ||||| |||||||| | |||||||| |||||||||||||||||| |
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| T |
29773168 |
tgggcaggtaccctccacaagtcgatcggctaagaaccttttgcatgtatcgcagtaaagctgaaattt |
29773236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 368
Target Start/End: Original strand, 50568978 - 50569065
Alignment:
| Q |
283 |
tgaacacctgctccattgttctctcggagatccatttgttatcaaa--tatcttttggaaaattgactggcaaatttcagtttgctca |
368 |
Q |
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| T |
50568978 |
tgaacacctgctccacggttctctcggatagccatttgttatcaaatttatctttttgaaaatttccttgcaaacttcagttagctca |
50569065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 453
Target Start/End: Original strand, 50569071 - 50569104
Alignment:
| Q |
420 |
acctccttatgaatagcatggtatctacacaaaa |
453 |
Q |
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| T |
50569071 |
acctccttattaatagcatggtatctacacaaaa |
50569104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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