View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_17 (Length: 488)
Name: NF13139_low_17
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 146 - 488
Target Start/End: Original strand, 50260427 - 50260769
Alignment:
| Q |
146 |
ctattctgatgcattcatacaaatgagaagatttattcttatttggattcatgtaaaatttatcatgtgtaccaaaccttaaatttggatcttgaaggac |
245 |
Q |
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| T |
50260427 |
ctattctgatgcattcatacaaatgagaagatttattcttatttggattcatgtaaaatttatcatgtgtaccaaaccttaaatttggatcttgaaggac |
50260526 |
T |
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| Q |
246 |
atatttgatttatcatgtatatatttaattgtgtaggaacaacgagcgaaagttattatgagttggcctggaacactcatttgagcaagaaaaaataagc |
345 |
Q |
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| T |
50260527 |
atatttgatttatcatgtatatatttaattgtgtaggaacaacgagcgaaagttattatgagttggcctggaacactcatttgagcaagaaaaaataagc |
50260626 |
T |
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| Q |
346 |
aacttaagcagattaaaggttgaggttgtaaactgtttacaaacctcaacctcgaactttcagctagatcaagggtttaagctgaagccttcaagatgtg |
445 |
Q |
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| T |
50260627 |
aacttaagcagattaaaggttgaggttgtaaactgtttacaaacctcaacctcgaactttcagctagatcaagggtttaagctgaagccttcaagatgtg |
50260726 |
T |
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| Q |
446 |
ctgcttcaatggtttagtgtgacactgaccacgtgatccacat |
488 |
Q |
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| T |
50260727 |
ctgcttcaatggtttagtgtgacactgaccacgtgatccacat |
50260769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 50260296 - 50260358
Alignment:
| Q |
15 |
aatacttacgtgttatcttcttgttaataactttaattcccattcttgttgattttgagtatc |
77 |
Q |
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| T |
50260296 |
aatacttatgtgttatcttcttgttaataactttaattcccattcttgttgattttgagtatc |
50260358 |
T |
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