View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_19 (Length: 483)
Name: NF13139_low_19
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 132744 - 132262
Alignment:
| Q |
1 |
ataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaaacagaaaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132744 |
ataaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaaacagaaaa |
132645 |
T |
|
| Q |
101 |
atctcaatctccattccaacaatctgaaacaaagaattagtaacaacatatcaaatatattcaactaaaaactttaatttagtattatgatccgactctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132644 |
atctcaatctccattccaacaatctgaaacaaagaattagtaacaacatatcaaatatattcaactaaaaactttaatttagtattatgatccgactctc |
132545 |
T |
|
| Q |
201 |
cttgccacacctggttttgcaagtgaaaattacaatgtcggccaaaatgttaccaattagaaaaagacatcccacagggtttatagttatgttatgtgca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
132544 |
cttgccacacctggttttgcaagtgaaaattacaatgtcggccaaaatgttaccaattagaaaaagacatcccacagggtttatagttatgttatgtgca |
132445 |
T |
|
| Q |
301 |
aggtctgcaaccaactgtaagccagtgagcttaacaaagaaattcaatttatccatcaatggtgttggtgaagaaacatggaattctttaaccaaaaaga |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
132444 |
aggtctgcaaccaactgtaagccagtgagcttaacaaagaaattcaatttatccatcaatggtgttggtgaaaaaacatggaattctttaaccaaaaaga |
132345 |
T |
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| Q |
401 |
tccgcattagttcatgttatatgtacacaattcacataaaaaagtaacaatcgagtgttgcaaaggtatatctgcaaaaatga |
483 |
Q |
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| T |
132344 |
tccgcattagttcatgttatatgtacacaattcacataaaaaagtaacaattgagtgttgcaaaggtatatctacaaaaatga |
132262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 17648923 - 17648814
Alignment:
| Q |
4 |
aataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaata-agcagcaaaaaa-taattaataaaacagaaaaa |
101 |
Q |
| |
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|||||||| | | |||||||||||| | ||||||| |||||||||| |||||| | ||||||| | ||||||| | || ||||||| |||||||||||| |
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| T |
17648923 |
aataagcaacaatctaattatgacattaacttaaa--caagcaacaagctaattatgacagaaaaacagcagcacacaagtaattaacaaaacagaaaaa |
17648826 |
T |
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| Q |
102 |
tctcaatctcca |
113 |
Q |
| |
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| |||||||||| |
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| T |
17648825 |
tatcaatctcca |
17648814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 48025202 - 48025313
Alignment:
| Q |
2 |
taaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaaacagaaaaa |
101 |
Q |
| |
|
|||||||||| | | |||||||||||| ||| | |||||||||||| | ||||| | ||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
48025202 |
taaataagcaacaatctaattatgacatttatacataaacaagcaacactttaattatgacagaaaacagcagtagaaaataattaacaaaacagaaaaa |
48025301 |
T |
|
| Q |
102 |
tctcaatctcca |
113 |
Q |
| |
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| |||||||||| |
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| T |
48025302 |
tatcaatctcca |
48025313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 48024091 - 48024202
Alignment:
| Q |
2 |
taaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaaacagaaaaa |
101 |
Q |
| |
|
|||||||||| | | |||||||||||||||| | ||||||| |||| | ||||| | ||||||| ||||| | ||||||||||| |||| ||||||| |
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| T |
48024091 |
taaataagcaacaatctaattatgacacttatacataaacaagtaacactttaattatgacagaaaacagcagtagaaaataattaacaaaagagaaaaa |
48024190 |
T |
|
| Q |
102 |
tctcaatctcca |
113 |
Q |
| |
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| |||||||||| |
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|
| T |
48024191 |
tatcaatctcca |
48024202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 48024642 - 48024753
Alignment:
| Q |
2 |
taaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaaacagaaaaa |
101 |
Q |
| |
|
|||||||||| | | |||||||||||||||| | ||||| |||||| | ||||| | ||||||| ||||| | ||||||||||| |||||| ||||| |
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|
| T |
48024642 |
taaataagcaacaatctaattatgacacttatacataaacatgcaacattttaattatgacagaaaacagcagtagaaaataattaacaaaacataaaaa |
48024741 |
T |
|
| Q |
102 |
tctcaatctcca |
113 |
Q |
| |
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| |||||||||| |
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| T |
48024742 |
tatcaatctcca |
48024753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 48027382 - 48027493
Alignment:
| Q |
2 |
taaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaaacagaaaaa |
101 |
Q |
| |
|
|||||||||| | | |||||||||||||||| | |||||||||||| | |||| | |||||| |||| ||||||||||||| |||||||||||| |
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|
| T |
48027382 |
taaataagcaacaatctaattatgacacttatacataaacaagcaacacttaaattatggcagaaaacggcagtaaaaaataattaacaaaacagaaaaa |
48027481 |
T |
|
| Q |
102 |
tctcaatctcca |
113 |
Q |
| |
|
| |||||||||| |
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|
| T |
48027482 |
tatcaatctcca |
48027493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 113
Target Start/End: Original strand, 13111243 - 13111318
Alignment:
| Q |
38 |
aaacaagcaacaatctaatttttacagaaataagcagcaaaaaataattaataaaacagaaaaatctcaatctcca |
113 |
Q |
| |
|
|||||||||||| | ||||| | ||||||| ||||| ||||| ||||||| ||||||||||||| |||||||||| |
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| T |
13111243 |
aaacaagcaacactttaattatgacagaaaacagcagtaaaaagtaattaacaaaacagaaaaatatcaatctcca |
13111318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 7231054 - 7231117
Alignment:
| Q |
2 |
taaataagcagctacctaattatgacacttacttaaaaacaagcaacaatctaatttttacagaaa |
67 |
Q |
| |
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|||||||||||| | |||||||||||||| |||| |||||||||||||||||||| | ||||||| |
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|
| T |
7231054 |
taaataagcagcaatctaattatgacactaactt--aaacaagcaacaatctaattatgacagaaa |
7231117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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