View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13139_low_20 (Length: 480)
Name: NF13139_low_20
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_20 |
 | |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0028 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0014 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 130318 - 129874
Alignment:
| Q |
17 |
tgaagcatgtacccaggtagatcaatctgtgtatnnnnnnnnngttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
116 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130318 |
tgaagaatgtaccgaggtagatcaatctgtgtataaaaaaaa-gttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
130220 |
T |
|
| Q |
117 |
atcatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
130219 |
gtcatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatt |
130120 |
T |
|
| Q |
217 |
tgtggtgttggaaagtggnnnnnnnnn-ctagaccatgaattaagatttttagaccagctttagtcctgaccctgcagaatgcaacgtacaattgactat |
315 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||||| |||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||| || |
|
|
| T |
130119 |
tgtgttgttggaaagtggttttttttttctagatcatgaatcaagatttttagaccggctttagtcctgatcctggagaatgcaacgcacaattgaccat |
130020 |
T |
|
| Q |
316 |
gactgaacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctaggataaaataataggaaattg |
415 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| || |
|
|
| T |
130019 |
gactgaacactgatcttggcaaatatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcataggatacaataataggaaactg |
129920 |
T |
|
| Q |
416 |
tcttctgataagtttaaaaggccagggagattgagaaggtgacatg |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
129919 |
tcttctgataagtttaaaaggccagggagattgagaaggtgacatg |
129874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 461
Target Start/End: Original strand, 23965210 - 23965653
Alignment:
| Q |
17 |
tgaagcatgtacccaggtagatcaatctgtgtatnnnnnnnnngttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23965210 |
tgaagcatgtacccaggtagatcaatctgtgtataaaaaaaaa-ttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaaca |
23965308 |
T |
|
| Q |
117 |
atcatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23965309 |
atcatatatattgatgttaatattgacaataaagttaatgaaaacatggaaataaatttactcagtaaaggttatcaaaaacttccttgtaaaccacatt |
23965408 |
T |
|
| Q |
217 |
tgtggtgttggaaagtggnnnnnnnnnctagaccatgaattaagatttttagaccagctttagtcctgaccctgcagaatgcaacgtacaattgactatg |
316 |
Q |
| |
|
||||||| |||||||||| ||||| ||||||| |||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||| ||| |
|
|
| T |
23965409 |
tgtggtgctggaaagtggtttttttttctagatcatgaatcaagatttttagaccggctttagtcctgatcctggagaatgcaacgcacaattgaccatg |
23965508 |
T |
|
| Q |
317 |
actgaacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctaggataaaataataggaaattgt |
416 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| |
|
|
| T |
23965509 |
actgaacactgatcttggcaaatatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcataggatacaataataggaaactgt |
23965608 |
T |
|
| Q |
417 |
cttctgataagtttaaaaggccagggagattgagaaggtgacatg |
461 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
23965609 |
cttctgataagttaaaaaggccagggagattgagaaagtgacatg |
23965653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 33547665 - 33547212
Alignment:
| Q |
17 |
tgaagcatgtacccaggtagatcaatctgtgtatnnnnnnnnn-gttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaac |
115 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33547665 |
tgaagcatgtaccgaggttgatcaatctgtgtataaaaaaaaaagttacaatttgaaaacttcatgatattaaaa-gaaattttttgttatgatacaaac |
33547567 |
T |
|
| Q |
116 |
aatcatatatat----------tgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttg |
205 |
Q |
| |
|
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33547566 |
agtcatatatatatatatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttctttg |
33547467 |
T |
|
| Q |
206 |
taaaccacatctgtggtgttggaaagtggnnnnnnnnnctagaccatgaattaagatttttagaccagctttagtcctgaccctgcagaatgcaacgtac |
305 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
33547466 |
taaaccacatttgtggtgttggaaagtggtttttttt-ctagatcatgaatcaagatttttagaccggctttagtcctgaccctggagaatgcaacgtac |
33547368 |
T |
|
| Q |
306 |
aattgactatgactgaacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctaggataaaataa |
405 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
33547367 |
aattgaccatgactgaacactgatcttggcaaatatagaccaacactgtcaagagtctggccttgtgacttatttatagtcattgcataggatacaataa |
33547268 |
T |
|
| Q |
406 |
taggaaattgtcttctgataagtttaaaaggccagggagattgagaaggtgacatg |
461 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33547267 |
taggaaactgtcttctgataagtttaaaaggccagggagattgagaaggtgacatg |
33547212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 120 - 461
Target Start/End: Complemental strand, 26227986 - 26227646
Alignment:
| Q |
120 |
atatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatctgt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26227986 |
atatatattgatgttaatattgacaataaagttaatgaaaacagggaaataaacttactcagtaaaggttatcaaaaacttccttgtaaaccacatttgt |
26227887 |
T |
|
| Q |
220 |
ggtgttggaaagtggnnnnnnnnnctagaccatgaattaagatttttagaccagctttagtcctgaccctgcagaatgcaacgtacaattgactatgact |
319 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
26227886 |
ggtgttggaaagtggtttttttt-ctagatcatgaatcaagatttttagaccggctttagtcctgaccctggagaatgcaacgtacaattgaccatgact |
26227788 |
T |
|
| Q |
320 |
gaacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctaggataaaataataggaaattgtctt |
419 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
26227787 |
gaacactgatcttggcaaatatagaccaacactgtcaagagtctggccttgtgacttatttatagtcattgcataggatacaataataggaaactgtctt |
26227688 |
T |
|
| Q |
420 |
ctgataagtttaaaaggccagggagattgagaaggtgacatg |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26227687 |
ctgataagtttaaaaggccagggagattgagaaggtgacatg |
26227646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 60 - 127
Target Start/End: Complemental strand, 26228089 - 26228023
Alignment:
| Q |
60 |
gttacaatttgaaaacttaatgatattaaaatgaaattttttgttatgatacaaacaatcatatatat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26228089 |
gttacaatttgaaaacttaatgatattaaaa-gaaattttttgttatgatacaaacagtcatatatat |
26228023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 460
Target Start/End: Original strand, 4257966 - 4258129
Alignment:
| Q |
297 |
gcaacgtacaattgactatgactgaacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctagg |
396 |
Q |
| |
|
||||| |||||||||| ||||| || || ||| |||| | |||| ||| |||||||| || | ||| ||||| || ||||| |||||||| || || | |
|
|
| T |
4257966 |
gcaacatacaattgaccgtgactaaatacggatgttggaagatataaacctacactgtctagtgattgaccttgagatttattgatagtcatggcataag |
4258065 |
T |
|
| Q |
397 |
ataaaataataggaaattgtcttctgataagtttaaaaggccagggagattgagaaggtgacat |
460 |
Q |
| |
|
| | ||||||||||||||||||||| |||| ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
4258066 |
aaactataataggaaattgtcttctggtaagcttaaatggccatggggattgggaaggagacat |
4258129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 460
Target Start/End: Original strand, 20534499 - 20534662
Alignment:
| Q |
297 |
gcaacgtacaattgactatgactgaacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctagg |
396 |
Q |
| |
|
||||| |||||||||| ||||| || || ||| |||| | |||| ||| |||||||| || | ||| ||||| || ||||| |||||||| || || | |
|
|
| T |
20534499 |
gcaacatacaattgaccgtgactaaatacggatgttggaagatataaacctacactgtctagtgattgaccttgagatttattgatagtcatggcataag |
20534598 |
T |
|
| Q |
397 |
ataaaataataggaaattgtcttctgataagtttaaaaggccagggagattgagaaggtgacat |
460 |
Q |
| |
|
| | ||||||||||||||||||||| |||| ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
20534599 |
aaactataataggaaattgtcttctggtaagcttaaatggccatggggattgggaaggagacat |
20534662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 460
Target Start/End: Original strand, 21900936 - 21901099
Alignment:
| Q |
297 |
gcaacgtacaattgactatgactgaacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctagg |
396 |
Q |
| |
|
||||| |||||||||| ||||| || || ||| |||| | |||| ||| |||||||| || | ||| ||||| || ||||| |||||||| || || | |
|
|
| T |
21900936 |
gcaacatacaattgaccgtgactaaatacggatgttggaagatataaacctacactgtctagtgattgaccttgagatttattgatagtcatggcataag |
21901035 |
T |
|
| Q |
397 |
ataaaataataggaaattgtcttctgataagtttaaaaggccagggagattgagaaggtgacat |
460 |
Q |
| |
|
| | ||||||||||||||||||||| |||| ||||| ||||| || ||||| ||||| ||||| |
|
|
| T |
21901036 |
aaactataataggaaattgtcttctggtaagcttaaatggccatggggattgggaaggagacat |
21901099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 451
Target Start/End: Original strand, 23177648 - 23177778
Alignment:
| Q |
321 |
aacactgatcttggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctaggataaaataataggaaattgtcttc |
420 |
Q |
| |
|
||||||| ||| ||||||||||| |||||| ||| |||| |||||||||||| ||||| || ||||| || || || | ||| |||||| ||||||| | |
|
|
| T |
23177648 |
aacactggtctaggcaagtatagcccaacatagtcgagagattggccttgtgatttattaattgtcatagcatatgagacaattataggatattgtctcc |
23177747 |
T |
|
| Q |
421 |
tgataagtttaaaaggccagggagattgaga |
451 |
Q |
| |
|
| ||||| || || ||||| || |||||||| |
|
|
| T |
23177748 |
taataagcttgaacggccatggtgattgaga |
23177778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 459
Target Start/End: Original strand, 22060869 - 22060995
Alignment:
| Q |
333 |
ggcaagtatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctaggataaaataataggaaattgtcttctgataagtttaa |
432 |
Q |
| |
|
||||| ||||||||||||| ||| | || || |||||||| || || || |||||||| ||||| | |||||| |||||||| || || || | ||||| |
|
|
| T |
22060869 |
ggcaaatatagaccaacacagtccaaagactgaccttgtgatttgttaatggtcattgcataggaaacaataatgggaaattgcctcctaatcaatttaa |
22060968 |
T |
|
| Q |
433 |
aaggccagggagattgagaaggtgaca |
459 |
Q |
| |
|
||||||| ||||| || |||||||||| |
|
|
| T |
22060969 |
aaggccatggagactgtgaaggtgaca |
22060995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 459
Target Start/End: Original strand, 114019 - 114112
Alignment:
| Q |
366 |
ccttgtgacttatttatagtcattgcctaggataaaataataggaaattgtcttctgataagtttaaaaggccagggagattgagaaggtgaca |
459 |
Q |
| |
|
||||||||||| || || |||||||| || || | |||||||||||||||||| || || | |||||||||||| ||||| || || ||||||| |
|
|
| T |
114019 |
ccttgtgacttgttaatggtcattgcataagaaacaataataggaaattgtctcctaatcaatttaaaaggccatggagactgtgatggtgaca |
114112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 339 - 462
Target Start/End: Original strand, 19289933 - 19290056
Alignment:
| Q |
339 |
tatagaccaacactgtcaagagtttggccttgtgacttatttatagtcattgcctaggataaaataataggaaattgtcttctgataagtttaaaaggcc |
438 |
Q |
| |
|
|||| ||||||||| ||||| | || ||||| || || || ||||||||||| ||||||| ||||| || || |||||||| |||| ||||| |||| |
|
|
| T |
19289933 |
tataaaccaacactatcaagggactgaccttgagatttgttaatagtcattgcataggatactataattgggaactgtcttcttgtaagcttaaatggcc |
19290032 |
T |
|
| Q |
439 |
agggagattgagaaggtgacatgt |
462 |
Q |
| |
|
| || ||||||||||| ||||||| |
|
|
| T |
19290033 |
aaggtgattgagaaggagacatgt |
19290056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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