View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_21 (Length: 475)
Name: NF13139_low_21
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_21 |
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| [»] scaffold2079 (2 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 178; Significance: 8e-96; HSPs: 2)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 10 - 230
Target Start/End: Complemental strand, 865 - 643
Alignment:
| Q |
10 |
ataattctccaacttcgttcaatctagaaaagggttgaataaataaaatattagaaggaacagagtaagttaatgtttgagtagtgattgaaaattgaag |
109 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
865 |
ataattctccaacttcattcaatctagaaa-gggttgaataaataaaatattagaagaaacagagtaagttaatgtttgagtagtgattgaaaattgaag |
767 |
T |
|
| Q |
110 |
ttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaatacttccattgttcttcaaactaaacttttg---atgagtac |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||||| |
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| T |
766 |
ttatttaccttgttgaatctgatgaagttgaagttgcatttggaattgtagctcctaattctgccattgttcttcaaactcaacttttgatgatgagtac |
667 |
T |
|
| Q |
207 |
aacacgttcttcaatattgctttt |
230 |
Q |
| |
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||||| |||||||||||||||||| |
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| T |
666 |
aacacattcttcaatattgctttt |
643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 273 - 452
Target Start/End: Complemental strand, 612 - 438
Alignment:
| Q |
273 |
aagaaaaaacatggaaaaagaggtttgacacaatttggaa-agacagtgacccataaaaacgtttaatacgaattcgttttatactatagttctcgattg |
371 |
Q |
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|||||||||||||||||| ||| | ||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
612 |
aagaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactata---ctcgatt- |
517 |
T |
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| Q |
372 |
agaaacttcacgaccaaagagtaaacaagattgaaccggtcccaccaaatagatttccatttattccttcatttttatatt |
452 |
Q |
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||| ||| | |||| ||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
516 |
-gaactttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaataga-ttccatttattccttcatttttatatt |
438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 3e-61; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 98 - 362
Target Start/End: Original strand, 6333713 - 6333977
Alignment:
| Q |
98 |
tgaaaattgaagttatttaccttgttgaatctgatgaagttgaagttgcatttggaatt------gtagctcctaatacttccattgttcttcaaactaa |
191 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |
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| T |
6333713 |
tgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgcatttggaattgtaattgtagctcctaattcagccattgttcttcaaactaa |
6333812 |
T |
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| Q |
192 |
acttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttg-gtgtttggaatagacttttctccttgaaagaaaaaacatggaaaa |
290 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| || || | || ||| | | ||||||||||| |||||| |
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| T |
6333813 |
acttttgatgagtacaacacattcttcaatattgcttttcttatataatagttgagttttggaaaaagagatat-------gaagaaaaaacagggaaaa |
6333905 |
T |
|
| Q |
291 |
agaggtttgacacaatttgga-aagacagtgacccataaaaacgtttaatacgaattcgttttatactatagt |
362 |
Q |
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|||||| |||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||| ||||| |
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| T |
6333906 |
agaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaa-tcgttttatacgatagt |
6333977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 68 - 372
Target Start/End: Original strand, 6326203 - 6326500
Alignment:
| Q |
68 |
aacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctga------tgaagttgaagttgcatttggaattgtagc |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |
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| T |
6326203 |
aacagagtaagttaatgtttgagtagtgattgaaaattgaagttatttaccttgttgaagctgatgaagttgaagttgaagttgcatttgcaattgtagc |
6326302 |
T |
|
| Q |
162 |
tcctaatacttccattgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttggtgtttggaatagact |
261 |
Q |
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| T |
6326303 |
ttctaattcagccattgttcgttaaact---cttttgatgagtacaacacattcttcaatattgcttttcttatagaagagttgagttttggaatag--- |
6326396 |
T |
|
| Q |
262 |
tttctccttgaaagaaaaaacatggaaaaagaggtttgacacaatttggaaa------gacagtgacccataaaaacgtttaatacgaattcgttttata |
355 |
Q |
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||||||| ||||||||||||||| |||||||| |||||||| || |||||||||| |||||||||||||||| |||||||||| |
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| T |
6326397 |
-----------aagaaaagacatggaaaaagaggcttgacacactttggaaagatagtgaaagtgacccat-taaacgtttaatacgaa-tcgttttata |
6326483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 81 - 230
Target Start/End: Complemental strand, 6242582 - 6242427
Alignment:
| Q |
81 |
aatgtttgagtagtgattgaaaattgaagttatttaccttgttgaatctgatgaagttgaagtt------gcatttggaattgtagctcctaatacttcc |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||||||||||||||||| || || |
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| T |
6242582 |
aatgtttgagtagtgattgaaaattgaagttatttaccttattgaatccgatgaagttcaagttcaagttgcatttggaattgtagctcctaattctgcc |
6242483 |
T |
|
| Q |
175 |
attgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgctttt |
230 |
Q |
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|||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
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| T |
6242482 |
gttgttcttcaaacttaacttttgataagtacaacacattcttcaatattgctttt |
6242427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 313 - 452
Target Start/End: Complemental strand, 6242388 - 6242251
Alignment:
| Q |
313 |
agacagtgacccat-aaaaacgtttaatacgaattcgttttatactatagttctcgattgagaaacttcacgaccaaagagtaaacaagattgaaccggt |
411 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||| ||| ||| || |||||||| || |
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| T |
6242388 |
agacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgatt--gaaatttcttgtccaacgagcaaagaaaattgaacctgt |
6242291 |
T |
|
| Q |
412 |
cccaccaaatagatttccatttattccttcatttttatatt |
452 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6242290 |
cccaccaaataga-ttccatttattccttcatttttatatt |
6242251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 6220986 - 6220902
Alignment:
| Q |
173 |
ccattgttcttcaaactaaacttttgatgagtacaacacgttcttcaatattgcttttcttatataatagttggtgtttggaata |
257 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||| ||||||||||| |
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|
| T |
6220986 |
ccattgttcttcaaactcaacttttgatgagtacaacacatgcttcaatattggtttacttatataatagttgatgtttggaata |
6220902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 6330641 - 6330679
Alignment:
| Q |
317 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
356 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| |
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| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6330679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 6347119 - 6347157
Alignment:
| Q |
317 |
agtgacccataaaaacgtttaatacgaattcgttttatac |
356 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgttttatac |
6347157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 317 - 358
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
317 |
agtgacccataaaaacgtttaatacgaattcgttttatacta |
358 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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