View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_22 (Length: 463)
Name: NF13139_low_22
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 64 - 445
Target Start/End: Original strand, 42236332 - 42236712
Alignment:
| Q |
64 |
tgaacataacatgatgtgaaatcactttcgaagatcgttcccgaaactatgagagtgagataaaaacaaaaacatatagcaagagacaagtgttgtgtcc |
163 |
Q |
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| T |
42236332 |
tgaacataacatgatgtgaaatcactttcgaagatcgttcccgaaactatgagagtgagataaaaacaaaaacatatagcaagagacaagtgttgtgtcc |
42236431 |
T |
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| Q |
164 |
agaacttccatattttctctcaaactctcaagacccttctccacctttcacaccaactctatatattcacaactcccacttcccactcctatcatcaaca |
263 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42236432 |
agaactttcatattttctctcaaactctcaagacccttctccacctttcacaccaactctatatattcacaactctcacttcccactcctatcatcaaca |
42236531 |
T |
|
| Q |
264 |
attgcaactgattctatctagcaagctactaatctttgttgttcattgtttcatttcttcatccttttttctactctactttcctacgtgtaatagccat |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
42236532 |
attgcaactgattctatctagcaagctactaatctttgttgttaattgtttcatttcttcatcc-tttttctactctactttcctacgtataatagccat |
42236630 |
T |
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| Q |
364 |
ggctcaagcagtgtcattgtcaacaactacttcacctatgctttccccaaaagcagggtactcggcagaaacacgtaacaag |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236631 |
ggctcaagcagtgtcattgtcaacaactacttcacctatgctttccccaaaagcagggtactcggcagaaacacgtaacaag |
42236712 |
T |
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