View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_26 (Length: 422)
Name: NF13139_low_26
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 230 - 400
Target Start/End: Complemental strand, 32060097 - 32059927
Alignment:
| Q |
230 |
ggcttcttccatctctgtccaacattcttgctgcccgagccttgttctgctgtttgcagcgtgacagcagctgcattaccagactgtatgtgttgtgact |
329 |
Q |
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| T |
32060097 |
ggcttcttccatttctgtccaacattcttgttgcccgagccttgttctgctgtttgcagcgtgacagcagctgcatcactagactgtatgagttgtgact |
32059998 |
T |
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| Q |
330 |
gttgcttcttgttggcattcctccaatcctcaagcatgtgctatctcttgcaacaatattgctattattca |
400 |
Q |
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| T |
32059997 |
gttgcttcttgttggcattcctccaatcctcaagcatgtgttatctcttgcaacaatatttctattattca |
32059927 |
T |
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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 14945202 - 14945382
Alignment:
| Q |
1 |
cgaatcgacttcaaaatcaacattttgtagccgtaaataatgtatccaccaaataggataatacaaacccaatgcctcacctacatctaaaagacatacc |
100 |
Q |
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| T |
14945202 |
cgaatcaacttcaaaatcaacatttggtagtcgtaaatcatgtatccactgaatagcatgatacaaaccaaatgcttctcctacatctactaaatatata |
14945301 |
T |
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| Q |
101 |
cgggtcaaccacatcgtttttgtgcgtacaaaatgcccctcttcgtcagggatgcacaaagctatacccagcctatttgtg |
181 |
Q |
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| T |
14945302 |
gggatgaaccacattgttttagcgaatacaaaacgtccctctttgtcacggatgcacatctctatacccaacctatttgtg |
14945382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 371
Target Start/End: Original strand, 14945552 - 14945594
Alignment:
| Q |
329 |
tgttgcttcttgttggcattcctccaatcctcaagcatgtgct |
371 |
Q |
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| T |
14945552 |
tgttgcttcttgttggcagtcctacaatcctcaagcaagtgct |
14945594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 9834711 - 9834785
Alignment:
| Q |
15 |
aatcaacattttgtagccgtaaataatgtatccaccaaataggataatacaaacccaatgcctcacctacatcta |
89 |
Q |
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| T |
9834711 |
aatcaacatttggtagccgtaaatcatgtatccacttaatagcatgatacaaccccaaagcttctcctacatcta |
9834785 |
T |
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