View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13139_low_28 (Length: 397)

Name: NF13139_low_28
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13139_low_28
NF13139_low_28
[»] chr8 (21 HSPs)
chr8 (27-304)||(5253128-5253406)
chr8 (82-273)||(31284815-31285005)
chr8 (82-273)||(44026879-44027071)
chr8 (93-272)||(8911799-8911979)
chr8 (82-295)||(33419797-33420010)
chr8 (89-270)||(21279558-21279740)
chr8 (87-273)||(2560699-2560886)
chr8 (82-273)||(23619154-23619342)
chr8 (82-273)||(17931122-17931316)
chr8 (147-273)||(10498039-10498166)
chr8 (87-295)||(13197003-13197213)
chr8 (182-273)||(23612379-23612470)
chr8 (88-273)||(12516235-12516424)
chr8 (180-266)||(30785164-30785252)
chr8 (238-273)||(16954069-16954104)
chr8 (238-273)||(18824186-18824221)
chr8 (238-273)||(18825679-18825714)
chr8 (82-116)||(10498158-10498192)
chr8 (238-272)||(10664245-10664279)
chr8 (238-272)||(23597501-23597535)
chr8 (243-272)||(5584224-5584253)
[»] chr7 (19 HSPs)
chr7 (83-273)||(20080509-20080700)
chr7 (87-273)||(14683233-14683422)
chr7 (82-273)||(10469275-10469467)
chr7 (82-273)||(3067768-3067960)
chr7 (82-273)||(37165940-37166130)
chr7 (87-268)||(13842776-13842956)
chr7 (85-295)||(9132531-9132741)
chr7 (82-273)||(26135922-26136111)
chr7 (82-149)||(10345326-10345393)
chr7 (82-233)||(26144341-26144491)
chr7 (197-277)||(20595931-20596011)
chr7 (97-142)||(22611635-22611680)
chr7 (230-273)||(16166024-16166067)
chr7 (238-273)||(6603741-6603776)
chr7 (238-273)||(8277280-8277315)
chr7 (238-273)||(13449575-13449610)
chr7 (238-272)||(4543090-4543124)
chr7 (238-272)||(37415218-37415252)
chr7 (243-272)||(45286864-45286893)
[»] chr2 (24 HSPs)
chr2 (82-277)||(3875413-3875609)
chr2 (82-273)||(12219922-12220114)
chr2 (91-273)||(16179274-16179461)
chr2 (82-273)||(37937009-37937198)
chr2 (82-273)||(22630967-22631160)
chr2 (82-273)||(40258928-40259118)
chr2 (82-295)||(17877232-17877448)
chr2 (82-273)||(16790547-16790736)
chr2 (137-273)||(23205351-23205488)
chr2 (137-273)||(23676955-23677092)
chr2 (82-273)||(1386214-1386401)
chr2 (87-195)||(9966233-9966343)
chr2 (238-272)||(29440773-29440807)
chr2 (238-273)||(9188444-9188479)
chr2 (238-273)||(33310944-33310979)
chr2 (238-272)||(8888914-8888948)
chr2 (243-273)||(10601136-10601166)
chr2 (238-272)||(24235378-24235412)
chr2 (238-272)||(24238650-24238684)
chr2 (238-272)||(25959482-25959516)
chr2 (230-272)||(42368492-42368534)
chr2 (238-272)||(45499151-45499185)
chr2 (243-272)||(25871067-25871096)
chr2 (243-272)||(30274561-30274590)
[»] chr5 (22 HSPs)
chr5 (87-273)||(17664700-17664887)
chr5 (82-273)||(23044286-23044477)
chr5 (82-273)||(26292934-26293125)
chr5 (107-273)||(26907204-26907372)
chr5 (82-267)||(17748584-17748767)
chr5 (112-273)||(22131405-22131566)
chr5 (137-273)||(11958980-11959117)
chr5 (82-273)||(12088102-12088291)
chr5 (82-272)||(12058282-12058470)
chr5 (87-283)||(18952842-18953042)
chr5 (82-273)||(34132772-34132961)
chr5 (82-273)||(34143003-34143192)
chr5 (174-302)||(35049742-35049872)
chr5 (87-159)||(20055923-20055996)
chr5 (87-194)||(26895468-26895577)
chr5 (235-272)||(43492050-43492087)
chr5 (238-273)||(14015930-14015965)
chr5 (238-272)||(22936732-22936766)
chr5 (238-272)||(41306318-41306352)
chr5 (238-272)||(41876546-41876580)
chr5 (238-272)||(42063226-42063260)
chr5 (244-272)||(26752493-26752521)
[»] chr4 (20 HSPs)
chr4 (82-273)||(53009345-53009536)
chr4 (82-273)||(30392712-30392904)
chr4 (82-273)||(25962202-25962391)
chr4 (82-266)||(46955273-46955456)
chr4 (82-277)||(21419932-21420125)
chr4 (82-273)||(40493156-40493345)
chr4 (82-273)||(11195819-11196005)
chr4 (82-295)||(29544637-29544852)
chr4 (82-273)||(18672871-18673060)
chr4 (82-195)||(35510135-35510245)
chr4 (135-277)||(15164392-15164534)
chr4 (238-272)||(18911802-18911836)
chr4 (238-273)||(29325119-29325154)
chr4 (238-273)||(40616597-40616632)
chr4 (238-273)||(52530724-52530759)
chr4 (243-277)||(34017570-34017604)
chr4 (238-272)||(34319709-34319743)
chr4 (238-272)||(40902865-40902899)
chr4 (238-272)||(44808747-44808781)
chr4 (238-272)||(48637803-48637837)
[»] chr3 (37 HSPs)
chr3 (82-283)||(17531421-17531621)
chr3 (82-277)||(37408910-37409106)
chr3 (91-273)||(34983564-34983747)
chr3 (82-273)||(17528536-17528726)
chr3 (82-273)||(54720200-54720393)
chr3 (82-273)||(25442636-25442824)
chr3 (82-272)||(52990929-52991118)
chr3 (84-273)||(48063814-48063998)
chr3 (82-233)||(17141637-17141789)
chr3 (83-273)||(32366906-32367094)
chr3 (94-273)||(25486374-25486557)
chr3 (122-268)||(35751710-35751856)
chr3 (82-273)||(22416612-22416799)
chr3 (171-295)||(46885230-46885356)
chr3 (87-273)||(17039792-17039982)
chr3 (113-273)||(15195119-15195280)
chr3 (87-266)||(27092128-27092311)
chr3 (82-270)||(12561004-12561199)
chr3 (190-273)||(11785110-11785194)
chr3 (82-149)||(46885169-46885236)
chr3 (82-149)||(28007968-28008036)
chr3 (230-272)||(11190900-11190942)
chr3 (238-272)||(16184461-16184495)
chr3 (216-272)||(2873925-2873980)
chr3 (238-273)||(50461327-50461362)
chr3 (238-272)||(539208-539242)
chr3 (230-272)||(2775868-2775910)
chr3 (230-272)||(2779110-2779152)
chr3 (238-272)||(6922902-6922936)
chr3 (230-272)||(7486945-7486987)
chr3 (238-272)||(10106378-10106412)
chr3 (238-272)||(24125881-24125915)
chr3 (238-272)||(30691117-30691151)
chr3 (238-272)||(35412887-35412921)
chr3 (243-272)||(8461272-8461301)
chr3 (243-272)||(24129163-24129192)
chr3 (238-270)||(28266300-28266332)
[»] scaffold0035 (1 HSPs)
scaffold0035 (82-295)||(64003-64218)
[»] chr6 (20 HSPs)
chr6 (88-273)||(19476154-19476338)
chr6 (82-296)||(4512622-4512837)
chr6 (82-273)||(24400325-24400515)
chr6 (82-273)||(24410444-24410634)
chr6 (82-273)||(24155154-24155344)
chr6 (82-273)||(26896045-26896237)
chr6 (82-273)||(18855814-18856003)
chr6 (87-273)||(32109819-32110007)
chr6 (82-273)||(13947164-13947349)
chr6 (82-273)||(7128445-7128634)
chr6 (82-273)||(28230741-28230931)
chr6 (89-277)||(11125478-11125668)
chr6 (87-185)||(22561037-22561136)
chr6 (230-272)||(5737854-5737896)
chr6 (236-272)||(3596571-3596607)
chr6 (238-273)||(2379528-2379563)
chr6 (238-272)||(9954260-9954294)
chr6 (230-272)||(11729122-11729164)
chr6 (230-272)||(30655747-30655789)
chr6 (243-272)||(1125527-1125556)
[»] chr1 (14 HSPs)
chr1 (82-273)||(27354729-27354922)
chr1 (84-296)||(905447-905661)
chr1 (87-268)||(672861-673043)
chr1 (82-128)||(29643150-29643199)
chr1 (230-272)||(20448122-20448164)
chr1 (230-272)||(20533889-20533931)
chr1 (238-273)||(45960536-45960571)
chr1 (238-272)||(1950238-1950272)
chr1 (238-272)||(2794525-2794559)
chr1 (230-272)||(20399143-20399185)
chr1 (238-272)||(28111354-28111388)
chr1 (230-268)||(33898621-33898659)
chr1 (243-272)||(23021712-23021741)
chr1 (243-272)||(27536323-27536352)
[»] scaffold0065 (3 HSPs)
scaffold0065 (82-282)||(58459-58659)
scaffold0065 (85-159)||(58321-58395)
scaffold0065 (233-273)||(58418-58458)
[»] scaffold0191 (1 HSPs)
scaffold0191 (93-273)||(4069-4250)
[»] scaffold0218 (1 HSPs)
scaffold0218 (86-273)||(10557-10741)
[»] scaffold0048 (1 HSPs)
scaffold0048 (82-273)||(15556-15745)
[»] scaffold0084 (2 HSPs)
scaffold0084 (82-268)||(19424-19609)
scaffold0084 (82-268)||(29509-29688)
[»] scaffold0807 (1 HSPs)
scaffold0807 (82-273)||(1860-2051)
[»] scaffold0038 (1 HSPs)
scaffold0038 (82-273)||(31239-31428)
[»] scaffold0126 (1 HSPs)
scaffold0126 (87-268)||(14112-14292)
[»] scaffold0066 (1 HSPs)
scaffold0066 (87-195)||(57453-57562)
[»] scaffold0056 (1 HSPs)
scaffold0056 (82-273)||(65110-65301)
[»] scaffold0321 (1 HSPs)
scaffold0321 (91-178)||(2854-2942)
[»] scaffold1208 (1 HSPs)
scaffold1208 (230-272)||(472-514)
[»] scaffold0250 (1 HSPs)
scaffold0250 (238-273)||(19693-19728)
[»] scaffold0962 (1 HSPs)
scaffold0962 (238-272)||(3073-3107)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 27 - 304
Target Start/End: Original strand, 5253128 - 5253406
Alignment:
Q  27 cttcatgattttgtcaagatttacatgaggtattaaaacattatgactcataccactaaactcatctctctcttattcttaaaaccaatctttattttct 126  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5253128 cttcatgattttgtcaagatctacatgagatattaaaacattatgactcataccactaaactcatctctctcttattcttaaaaccaatctttattttct 5253227  T
Q  127 gtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataactttatacatcctattttacaccgtaattgaattattaagattaa 226  Q
    ||||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| | |||||    
T  5253228 gtctttacttttatgcaaacaaaccaatctactgtttagtagcaaaacaaaataactttatacatcatattttacaacgtaattgaattattgaaattaa 5253327  T
Q  227 aatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccctta-caaacgtctatcataattcatg 304  Q
    ||||| | ||||||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||    
T  5253328 aatcaatccttgtgggaacgatatttttactacttcgatagaatttgatacgcttaccaaacgtctatcataattcatg 5253406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 31284815 - 31285005
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||  ||  ||||||||||||||||||||||| |||| |||||  |||| ||    
T  31284815 ctaaactcatctctctcttattcttaaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactacctagtggcaaattaaaagaa 31284912  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | ||||||||||||| |||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  31284913 cctttatacatcctaatttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 31285005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 44027071 - 44026879
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||  ||| |||||||||| |||||||||||| |   |||| ||||| ||||| ||    
T  44027071 ctaaactcatttctctcttattcttaaaaccaatctttaatttctgttattaattttatgcaatcaaaccaatcaaatgtctagtggcaaatcaaaagaa 44026972  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||||||  ||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  44026971 cttttatacatcctaacttacaacgtaattgaattattgagattaaaatcagtccttgtgggaacgatatttttactacttcgatagtatttg 44026879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 93 - 272
Target Start/End: Original strand, 8911799 - 8911979
Alignment:
Q  93 tctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt-atacat 191  Q
    ||||||||||||||||||| |||||| |  |||| || ||| |||||||||| |||||||||||||| | |||| ||||| ||||| |||||| ||||||    
T  8911799 tctctcttattcttaaaactaatcttcaaattctatcattacttttatgcaaccaaaccaatcaactgcctagtggcaaatcaaaagaacttttatacat 8911898  T
Q  192 cctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||  ||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  8911899 cctaacttacaacgtaattgaattattgagattaaaatcagtccttgtgggaacgatatttttactacttcgatagtattt 8911979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 82 - 295
Target Start/End: Original strand, 33419797 - 33420010
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||| |||| ||| |||||||||| |||| ||||||||| | |||| |||   ||||||||    
T  33419797 ctaaactcatctctctcttcttcttaaaaccaa-ctttactttatgtcgttacttttatgcaatcaaaacaatcaactgcctagtggcatt-caaaataa 33419894  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccct 280  Q
    |||| ||||||||||  ||||| ||||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| ||    
T  33419895 cttttatacatcctaacttacaacgtaattgaattatggagattaaaatcagtccttgtggaaacaatatttttactacttcgatagtatttggtacact 33419994  T
Q  281 t-acaaacgtctatca 295  Q
    |  |||||||||||||    
T  33419995 tgccaaacgtctatca 33420010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 89 - 270
Target Start/End: Complemental strand, 21279740 - 21279558
Alignment:
Q  89 catctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-tttat 187  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| | |||||||| ||| | |||| |||||  |||||||| ||||     
T  21279740 catctctctctcattcttaaaaccaatctttattttctgtcgttatttttatgcaatccaaccaatctactgcctagtggcaaataaaaataacttttac 21279641  T
Q  188 acatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtat 270  Q
    ||||||||||| | | |||| |||||| ||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||    
T  21279640 acatcctatttaataacgtagttgaataattgagattaaaaacagtccttgtgggaacgatatttttactacttcgatagtat 21279558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 2560699 - 2560886
Alignment:
Q  87 ctcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-ttt 185  Q
    ||||| |||||||||||||||||| | | |||||  |||  |||||| |||||||||| |||| ||||| ||||| |||| |||||  |||| ||| |||    
T  2560699 ctcatttctctcttattcttaaaaaccaactttaaattcaatctttacttttatgcaatcaaatcaatctactacctagtggcaaattaaaagaaccttt 2560798  T
Q  186 atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||||||| ||| | | ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  2560799 atacatcctttttaataacgtaattgaattattgagattaaaaccagttcttgtgggaacgatatttttactacttcgatagtatttg 2560886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 23619342 - 23619154
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||  ||  ||||||||||| ||||||||| | |||  |||||  |||| ||    
T  23619342 ctaaactcatctctctcttattcttaaa-ccaatctttattttctgttattgctt--atgcaaacaaatcaatcaactgcctagcggcaaattaaaagaa 23619246  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||    
T  23619245 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aacaatatttttactacttcgatagtatttg 23619154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 17931122 - 17931316
Alignment:
Q  82 ctaaactcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||| |||||||||||||| | |||| ||||| ||||||     
T  17931122 ctaatctcatctctctcttgttctttaaaaccaatctttattttctgtcattatttttatgcaatcaaaccaatcaactgcctagtggcaaatcaaaatg 17931221  T
Q  181 ac--tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||  ||| ||||||||| || | | |||| |  |||| ||  |||||||| |||| ||||||| ||| |||||||||||||||||||||| ||||    
T  17931222 accttttttacatcctaattaataacgtactaaaattgttgcgattaaaaacagtccttgtgggaacaatatttttactacttcgatagtttttg 17931316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 147 - 273
Target Start/End: Complemental strand, 10498166 - 10498039
Alignment:
Q  147 aaaccaatcaactacttagtagcaaaacaaaataacttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaac 245  Q
    ||||||||||||| | ||| ||||||  |||| |||||| ||||||||||  ||||| ||||||||||||||| |||||||||  ||| || |||| |||    
T  10498166 aaaccaatcaactgcctagcagcaaattaaaagaacttttatacatcctaagttacaacgtaattgaattattgagattaaaacgagtcctcgtgggaac 10498067  T
Q  246 gatatttttactacttcgatagtatttg 273  Q
    ||||||||||||||||||||||||||||    
T  10498066 gatatttttactacttcgatagtatttg 10498039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 87 - 295
Target Start/End: Original strand, 13197003 - 13197213
Alignment:
Q  87 ctcatctctctcttattcttaa-aaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa-ctt 184  Q
    ||||||| |||||||||||| | ||||||||||||||||| ||  ||| ||||||| || ||||| |||||||| | |||| ||||| |||||||| |||    
T  13197003 ctcatctatctcttattctttacaaccaatctttattttcagttgttacttttatggaatcaaacaaatcaactgcctagtggcaaatcaaaataacctt 13197102  T
Q  185 tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccctta-c 283  Q
    |||| ||||||||| | | |||| | ||||| || ||||||||| ||||  | |||| ||||||| |||||||||||||||| | |||| ||| |||| |    
T  13197103 tatatatcctatttaataacgtactagaattgttgagattaaaagcagtcttcgtgggaacgata-ttttactacttcgataatttttggtacacttacc 13197201  T
Q  284 aaacgtctatca 295  Q
    |||| |||||||    
T  13197202 aaacttctatca 13197213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 273
Target Start/End: Original strand, 23612379 - 23612470
Alignment:
Q  182 ctttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||||||||||||| |||||| ||||||||||||||| ||||||||| |||  ||||||| |||   |||||||||||||||||||||||||    
T  23612379 ctttatacatcctaatttacaacgtaattgaattattgagattaaaaccagcccttgtgggaacatgatttttactacttcgatagtatttg 23612470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 273
Target Start/End: Complemental strand, 12516424 - 12516235
Alignment:
Q  88 tcatctctctcttattcttaa-aaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-ttt 185  Q
    |||||||||||| |||||| | ||||||||||||||||||||| ||| |||||||||| |||||||||||||| | ||||  |||| ||||||||| |||    
T  12516424 tcatctctctctcattctttacaaccaatctttattttctgtcgttacttttatgcaatcaaaccaatcaactgcctagtgacaaatcaaaataacattt 12516325  T
Q  186 atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatat--ttttactacttcgatagtatttg 273  Q
    |||||| ||   | | | |    |||||||||| | ||||||| |||| ||||||| ||||||||  |||||| ||||||||||| ||||    
T  12516324 atacattctgaataataacacctttgaattattgaaattaaaaacagtccttgtgggaacgatattattttacaacttcgatagtttttg 12516235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 266
Target Start/End: Original strand, 30785164 - 30785252
Alignment:
Q  180 aactttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatat--ttttactacttcgata 266  Q
    |||||||||||||||| || | | ||| ||||||||||| | ||||||| || | ||||||| ||||||||  ||||||||||||||||    
T  30785164 aactttatacatcctaattaataacgtgattgaattattgaaattaaaaacaatccttgtgggaacgatattattttactacttcgata 30785252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 16954069 - 16954104
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  16954069 gtgggaacgatatttttactacttcgatagtatttg 16954104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 18824221 - 18824186
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  18824221 gtgggaacgatatttttactacttcgatagtatttg 18824186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 18825714 - 18825679
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  18825714 gtgggaacgatatttttactacttcgatagtatttg 18825679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 10498192 - 10498158
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatc 116  Q
    ||||||||||||||||||||||||| |||||||||    
T  10498192 ctaaactcatctctctcttattctttaaaccaatc 10498158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 10664245 - 10664279
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  10664245 gtgggaacgatatttttactacttcgatagtattt 10664279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 23597501 - 23597535
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  23597501 gtgggaacgatatttttactacttcgatagtattt 23597535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 5584253 - 5584224
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  5584253 aacgatatttttactacttcgatagtattt 5584224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 83 - 273
Target Start/End: Complemental strand, 20080700 - 20080509
Alignment:
Q  83 taaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac 182  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||| | |||| ||||| ||||| |||    
T  20080700 taaactcatctctctcttattcttaaaaccattctttattttctgtcattacttttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaagaac 20080601  T
Q  183 -tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
     |||||||||||||  ||||| ||||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  20080600 ttttatacatcctaacttacaacgtaattgaattattgagattaaaatcagtcattgtgggaacgatatttttactacttcgatagtatttg 20080509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 14683422 - 14683233
Alignment:
Q  87 ctcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataactt-- 184  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| | |||| |||||||||||||||||      
T  14683422 ctcatctctcttttattcttaaaaccaatctttattttttgtctttacttttatgcaaacaaatcaatcaactgcctagtggcaaaacaaaataactttt 14683323  T
Q  185 -tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
     || |||||||| |||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||    
T  14683322 atacacatcctagtttacaacgtaattgaattattgagattaaaatcagtccttgtgggaacgatatttttagtacttcgatggtatttg 14683233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 10469275 - 10469467
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||  ||| ||||||||||||||||||||||||| | |||| | ||| ||||||||    
T  10469275 ctaaactcatctctctcttattcttaaaatcaatctttactttttgttgttacttttatgcaaacaaaccaatcaactgcctagtggaaaatcaaaataa 10469374  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||||||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  10469375 cttttatacatcctaacttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 10469467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 3067960 - 3067768
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||| ||||||||||||||||||||||||||||  || |||| ||| ||||||||||||||||||||||| | | |||| ||||| ||||| ||    
T  3067960 ctaaactcatgtctctcttattcttaaaaccaatctttaaattttgtcattacttttatgcaaacaaaccaatcaaatgcctagtggcaaatcaaaagaa 3067861  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||||||  ||||| ||||||||||||||| |||||||||  | | ||||||| |||||||||||||||||||||||||||||||    
T  3067860 cttttatacatcctaacttacaacgtaattgaattattgagattaaaacaaatccttgtgggaacgatatttttactacttcgatagtatttg 3067768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 37166130 - 37165940
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||| |||||  |||| ||    
T  37166130 ctaaattcatctctctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagtggcaaattaaaagaa 37166033  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | ||||||||||||| |||||| |||||||||||||||  |||||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  37166032 cctttatacatcctaatttacaacgtaattgaattattgtgattaaaaccagtccttatggaaacgatatttttactacttcgatagtatttg 37165940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 87 - 268
Target Start/End: Original strand, 13842776 - 13842956
Alignment:
Q  87 ctcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-ttt 185  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||  | ||||||||||||| ||||||||| | |||| |||||  |||| ||| |||    
T  13842776 ctcatctctctcttattcttaaaaccaatctttattttctgttatt--tcttatgcaaacaaatcaatcaactgcctagtggcaaattaaaagaaccttt 13842873  T
Q  186 atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagt 268  Q
    ||| |||||| |||||| ||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  13842874 atatatcctaatttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagt 13842956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 85 - 295
Target Start/End: Complemental strand, 9132741 - 9132531
Alignment:
Q  85 aactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataactt 184  Q
    |||||||||||||||||||||||||||||| ||||| ||| || | ||| |||||||||| |||||||||||||| | |||| ||||| |||||||||||    
T  9132741 aactcatctctctcttattcttaaaaccaa-ctttactttttg-cattacttttatgcaatcaaaccaatcaactgcctagtggcaaatcaaaataactt 9132644  T
Q  185 -tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccctt-a 282  Q
     |||| ||||||  ||||| ||||||||||||||| |||||||||  ||| ||||||| ||||||||||||||||||| ||||||||||| ||| |||      
T  9132643 atatatatcctaacttacaacgtaattgaattatttagattaaaactagtccttgtgggaacgatatttttactactttgatagtatttggtacacttgc 9132544  T
Q  283 caaacgtctatca 295  Q
    |||||||||||||    
T  9132543 caaacgtctatca 9132531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 26136111 - 26135922
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||  ||  ||||||||||| ||||||||| | |||  |||||  |||| ||    
T  26136111 ctaaactcatctctctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaatcaatcaactgcctagcggcaaattaaaagaa 26136014  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  26136013 cctttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aacgatatttttactacttcgatagtatttg 26135922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 10345326 - 10345393
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaa 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  10345326 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtcattacttttatgcaaacaaa 10345393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 26144491 - 26144341
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||    ||||||||||||| ||||||||| | |||  |||||  |||| ||    
T  26144491 ctaaactcatctctctcttattctttaaaccaatctttattttctgttatt--gcttatgcaaacaaatcaatcaacttcctagcggcaaattaaaagaa 26144394  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagt 233  Q
    | |||||||||| ||  ||||| ||||||||||||||| ||||||||| ||||    
T  26144393 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagt 26144341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 20596011 - 20595931
Alignment:
Q  197 tttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgatac 277  Q
    |||||| |||| |||||||||| | ||||||| ||||  |||||| ||||| ||||||||||||| |||||||||||||||    
T  20596011 tttacaacgtagttgaattattgaaattaaaaccagtcattgtgggaacgaaatttttactacttagatagtatttgatac 20595931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 22611680 - 22611635
Alignment:
Q  97 tcttattcttaaaaccaatctttattttctgtctttagttttatgc 142  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  22611680 tcttattcttaaaaccaatctttattttctgtcattaattttatgc 22611635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 273
Target Start/End: Original strand, 16166024 - 16166067
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
T  16166024 cagtccttgtgggaacgatatttttactacttcgatagtatttg 16166067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 6603741 - 6603776
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  6603741 gtgggaacgatatttttactacttcgatagtatttg 6603776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 8277280 - 8277315
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  8277280 gtggtaacgatatttttactacttcgatagtatttg 8277315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 13449610 - 13449575
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  13449610 gtgggaacgatatttttactacttcgatagtatttg 13449575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 4543090 - 4543124
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  4543090 gtgggaacgatatttttactacttcgatagtattt 4543124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 37415252 - 37415218
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  37415252 gtgggaacgatatttttactacttcgatagtattt 37415218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 45286893 - 45286864
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  45286893 aacgatatttttactacttcgatagtattt 45286864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 7e-62; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 82 - 277
Target Start/End: Original strand, 3875413 - 3875609
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||   |||| ||||| ||||| ||    
T  3875413 ctaaactcatctttctcttattcttaaaaccaatctttattttctgtcattacttttatgcaaacaaaccaatcaactgactagtggcaaatcaaaagaa 3875512  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgatac 277  Q
    | |||||||||||||  ||||| ||||||||||||||| ||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||    
T  3875513 cttttatacatcctaacttacaacgtaattgaattattgagattaaaaccggtccttgtgggaacgatatttttactacttcgatagtatttgatac 3875609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 12219922 - 12220114
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||| ||| ||||| ||| |||| ||| ||||||||||||||||||||||||| | |||| ||||| ||||| ||    
T  12219922 ctaaactcatctctctcttattcttaaaatcaacctttactttttgtcgttaattttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaaaaa 12220021  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||||||  ||||| ||||||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||    
T  12220022 cttttatacatcctaacttacaacgtaattgaattattgagattaaaatcagtccttgtgggaacgaaatttttactacttcgatagtatttg 12220114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 16179274 - 16179461
Alignment:
Q  91 tctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-tttatac 189  Q
    |||||||||| || ||||||||| |||||||||| |||||||| ||||||||||||| ||||||||||| | |||| ||||||||||||||| |||||||    
T  16179274 tctctctcttgttattaaaaccagtctttattttttgtctttacttttatgcaaacagaccaatcaacttcctagtggcaaaacaaaataacttttatac 16179373  T
Q  190 atcctattttaca----ccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||||||||||||     ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  16179374 atcctattttacaatgtacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 16179461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 37937198 - 37937009
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||| ||| | |||| ||||| ||||| ||    
T  37937198 ctaaactcatctctctcttattcttaaaaccaatctttattttctgt---tacttttatgcaaacaaaccaatctactgcctagtggcaaatcaaaagaa 37937102  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||||||  ||||| |||| |||||||||| | ||||||| |||||||||||| || ||||||||||||||||||||||||||||    
T  37937101 cttttatacatcctaacttacaacgtagttgaattattgaaattaaaaccagttcttgtgggaatgatatttttactacttcgatagtatttg 37937009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 22630967 - 22631160
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtc-tttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| || |||| ||||||||||||||||||||||||| | |||| ||||| ||||| |    
T  22630967 ctaaactcatctctctcttattcttaaaaacaatctttattttctatcatttacttttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaaga 22631066  T
Q  181 acttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||| ||||||||||  ||||| | ||||| ||||||| ||||||||| | || ||||||| |||||||||||||||||||||||||||||||    
T  22631067 acttttatacatcctaacttacaacataattaaattattgagattaaaaccggtccttgtgggaacgatatttttactacttcgatagtatttg 22631160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 40259118 - 40258928
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||| | | |||| |||||  |||| ||    
T  40259118 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtcatt--gcttatgcaaacaaaccaatcaattgcctagtggcaaattaaaagaa 40259021  T
Q  182 -ctttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
     |||||||||||||| |||||| ||||||||||||||  ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  40259020 cctttatacatcctaatttacaacgtaattgaattatagagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 40258928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 82 - 295
Target Start/End: Original strand, 17877232 - 17877448
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagtttta-tgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    ||||||||||||| |||||||||||||||||||  |||| |||||||| ||| ||||| ||||||||||||||||||||   |||| ||||||||||| |    
T  17877232 ctaaactcatctccctcttattcttaaaaccaacttttactttctgtcgttacttttattgcaaacaaaccaatcaactgtctagtggcaaaacaaaaga 17877331  T
Q  181 ac-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccc 279  Q
    || |||||||||| ||||||||| ||||||||||||||| | ||||||| ||   || |||| | ||||||||||||||||||| ||||||||||||| |    
T  17877332 acttttatacatcatattttacaacgtaattgaattattgaaattaaaaccaaccctggtgggaccgatatttttactacttcggtagtatttgatacac 17877431  T
Q  280 tt-acaaacgtctatca 295  Q
    ||  |||||||||||||    
T  17877432 ttgccaaacgtctatca 17877448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 16790736 - 16790547
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||  ||  ||||||||||| ||||||||| | |||  |||||  |||| ||    
T  16790736 ctaaactcatctctctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaatcaatcaactgcctagcggcaaattaaaagaa 16790639  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| | |||||||||||||||||||||||||||||    
T  16790638 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-agcgatatttttactacttcgatagtatttg 16790547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 23205351 - 23205488
Alignment:
Q  137 ttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttc 235  Q
    ||||||||||||||||||||||| | |||| ||||| |||||||||||| ||||||||||  ||||| ||||||||||||||| ||||||||| |||| |    
T  23205351 ttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaataacttttatacatcctaacttacaacgtaattgaattattgagattaaaaccagtcc 23205450  T
Q  236 ttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||| |||||||||||||||||||||||||||||||    
T  23205451 tcgtgggaacgatatttttactacttcgatagtatttg 23205488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 273
Target Start/End: Original strand, 23676955 - 23677092
Alignment:
Q  137 ttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttc 235  Q
    ||||||||||||||||||||||| | |||| ||||| |||||||||||| ||||||||||  ||||| ||||||||||||||| ||||||||| |||| |    
T  23676955 ttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaataacttttatacatcctaacttacaacgtaattgaattattgagattaaaaccagtcc 23677054  T
Q  236 ttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||| |||||||||||||||||||||||||||||||    
T  23677055 tcgtgggaacgatatttttactacttcgatagtatttg 23677092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 1386401 - 1386214
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||||  ||  ||  |||||| |||||||||||||| | |||  |||||  |||| ||    
T  1386401 ctaaactcatctctctcttattctttaaaccaatctt-attttctgttattgctt--atgcaa-caaaccaatcaactgcctagcggcaaattaaaagaa 1386306  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| ||||||| |||||||||||||||||||||||    
T  1386305 cctttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgata-ttttactacttcgatagtatttg 1386214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 9966343 - 9966233
Alignment:
Q  87 ctcatctctctcttattctt-aaaaccaatctttattttctg-tctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-t 183  Q
    |||||||||||||||||||| |||||||||||||||||| || |  ||| ||||||| || |||||||||||||| | ||| |||||||||||||||| |    
T  9966343 ctcatctctctcttattctttaaaaccaatctttattttatgttagttacttttatgtaatcaaaccaatcaactgcctag-agcaaaacaaaataactt 9966245  T
Q  184 ttatacatccta 195  Q
    ||||||||||||    
T  9966244 ttatacatccta 9966233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 29440773 - 29440807
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||||||||||||||||||||||||||||||||||    
T  29440773 gtggaaacgatatttttactacttcgatagtattt 29440807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 9188479 - 9188444
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  9188479 gtgggaacgatatttttactacttcgatagtatttg 9188444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 33310944 - 33310979
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  33310944 gtgggaacgatatttttactacttcgatagtatttg 33310979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 8888914 - 8888948
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  8888914 gtgggaacgatatttttactacttcgatagtattt 8888948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 273
Target Start/End: Original strand, 10601136 - 10601166
Alignment:
Q  243 aacgatatttttactacttcgatagtatttg 273  Q
    |||||||||||||||||||||||||||||||    
T  10601136 aacgatatttttactacttcgatagtatttg 10601166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 24235378 - 24235412
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  24235378 gtgggaacgatatttttactacttcgatagtattt 24235412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 24238650 - 24238684
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  24238650 gtgggaacgatatttttactacttcgatagtattt 24238684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 25959516 - 25959482
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  25959516 gtgggaacgatatttttactacttcgatagtattt 25959482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 42368534 - 42368492
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  42368534 cagtttttgtgggaacgatatttttattacttcgatagtattt 42368492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 45499185 - 45499151
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  45499185 gtgggaacgatatttttactacttcgatagtattt 45499151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 25871067 - 25871096
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  25871067 aacgatatttttactacttcgatagtattt 25871096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 30274590 - 30274561
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  30274590 aacgatatttttactacttcgatagtattt 30274561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 17664700 - 17664887
Alignment:
Q  87 ctcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-ttt 185  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||||||| | |||| ||||||||||||||| |||    
T  17664700 ctcatctctcttttattcttgaaaccaatctttattttatgtctttacttttatgcaaacaaatcaatcaactgcctagtggcaaaacaaaataactttt 17664799  T
Q  186 atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||||| || ||||||  |||||||||||||| |||||||||||||| ||||||  |||||||||||||||||||||||| ||||||    
T  17664800 atacatcttagtttacaatgtaattgaattattgagattaaaatcagtccttgtgagaacgatatttttactacttcgataatatttg 17664887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 23044286 - 23044477
Alignment:
Q  82 ctaaactcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    ||||||||||||||||||||||||| ||||||||   ||| ||| |||| ||| ||||||||||||||||||||||||| | |||| ||||| |||||||    
T  23044286 ctaaactcatctctctcttattctttaaaaccaac--ttactttttgtcgttacttttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaata 23044383  T
Q  181 acttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||| ||| || |||||||||| ||||||||||||||| |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  23044384 acttttataaattctattttacaacgtaattgaattattgagattaaaatcagtccttatgggaacgatatttttactacttcgatagtatttg 23044477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 26292934 - 26293125
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| |||| ||| |||||||||| |||||||||||||| | |||| ||||| ||||| ||    
T  26292934 ctaaactcatctctctcttattcttaaaaccaa-ctttactttttgtcattacttttatgcaatcaaaccaatcaactgcctagtggcaaatcaaaagaa 26293032  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| || ||||||  |||||||||||||| ||||||||| |||| ||| ||| ||| ||||||||||||||| |||| ||||||    
T  26293033 cttttatacatcttaatttacaatgtaattgaattattgagattaaaaccagtacttatgggaacaatatttttactactttgatattatttg 26293125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 107 - 273
Target Start/End: Complemental strand, 26907372 - 26907204
Alignment:
Q  107 aaaaccaatctttattttctgtctttagttttatgcaaacaaa-ccaatcaactacttagtagcaaaacaaaataacttt-atacatcctattttacacc 204  Q
    |||||||||||||| ||||| || ||| ||||||||||||||| |||||||||| | |||| ||||| ||||| |||||| ||||||||||  ||||| |    
T  26907372 aaaaccaatctttaatttctatcattacttttatgcaaacaaaaccaatcaactgcctagtggcaaatcaaaagaacttttatacatcctaacttacaac 26907273  T
Q  205 gtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  26907272 gtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 26907204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 82 - 267
Target Start/End: Original strand, 17748584 - 17748767
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||  ||  ||||||||||||||||||||| | |||  |||||  |||| ||    
T  17748584 ctaaactcatctctctcttattcttaaaaccaatctttattttatgttattgctt--atgcaaacaaaccaatcaactgcctagcggcaaattaaaagaa 17748681  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatag 267  Q
    | ||||||||||||| |||||| ||| ||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||| ||||    
T  17748682 cctttatacatcctaatttacaacgtgattgaattattgagattaaaaccagtccttgtgg-aacgatatttttactacttcaatag 17748767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 112 - 273
Target Start/End: Original strand, 22131405 - 22131566
Alignment:
Q  112 caatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt-atacatcctattttacaccgtaatt 210  Q
    |||||||||||||||||  ||| |||||||||| ||||| || ||||| | |||| | ||||| |||||||||| |||||||||| |||||| |||||||    
T  22131405 caatctttattttctgttgttacttttatgcaa-caaacaaaccaactgcctagtggaaaaactaaataacttttatacatcctaatttacaacgtaatt 22131503  T
Q  211 gaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||||||||||||| ||||    
T  22131504 gaattattgagattaaatccagtccttgtggaaacgatatttttactacttcgatagtttttg 22131566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 11959117 - 11958980
Alignment:
Q  137 ttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttc 235  Q
    ||||| ||||||||||||||||| | |||| ||||| ||||| ||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||| |    
T  11959117 ttatggaaacaaaccaatcaactgcctagtggcaaatcaaaagaacctttatacatcctaatttacaacgtaattgaattattgagattaaaatcagtcc 11959018  T
Q  236 ttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| | || ||||||||||||||||||||||||||||    
T  11959017 ttgtaggaatgatatttttactacttcgatagtatttg 11958980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 12088102 - 12088291
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  ||  ||  ||||||||||| ||||||||  | |||  ||||   |||| ||    
T  12088102 ctaaactcatctctctcttagtcttaaatccaatctttattttctgttattgctt--atgcaaacaaaacaatcaaccgcctagcggcaatttaaaagaa 12088199  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  12088200 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagttcttgtgg-aacgatatttttactacttcgatagtatttg 12088291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 82 - 272
Target Start/End: Complemental strand, 12058470 - 12058282
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||  ||  |||||||||||||||| |||| | ||| || |||  |||| ||    
T  12058470 ctaaactcatctctctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaaccaattaactgcctagcagaaaattaaaagaa 12058373  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| || ||||||| |||||||||||||||||||    
T  12058372 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aatgatatttctactacttcgatagtattt 12058282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 87 - 283
Target Start/End: Original strand, 18952842 - 18953042
Alignment:
Q  87 ctcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa-ctt 184  Q
    |||||||||||||||||||| |||||||| ||||| |||| ||  ||| |||||||||||| |||||||||| | | |||| |||||||||||||| |||    
T  18952842 ctcatctctctcttattctttaaaaccaacctttactttcagttgttacttttatgcaaacgaaccaatcaattgcctagtggcaaaacaaaataacctt 18952941  T
Q  185 tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatat--ttttactacttcgatagtatttgataccctta 282  Q
    |||||||||||||| | | |||| ||||||| || | ||||||| |||| ||||||| ||||||||  ||||||||||| |||||| |||| ||| ||||    
T  18952942 tatacatcctatttaataacgtacttgaattgttgaaattaaaaacagtccttgtgggaacgatattattttactactttgatagtttttggtacactta 18953041  T
Q  283 c 283  Q
    |    
T  18953042 c 18953042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 34132961 - 34132772
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  ||  ||  ||||||||||| ||||||||  | |||  ||||   |||| ||    
T  34132961 ctaaactcatctctctcttagtcttaaatccaatctttattttctgttattgctt--atgcaaacaaaacaatcaaccgcctagcggcaatttaaaagaa 34132864  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  34132863 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aacgatatttttactacttcgatagtatttg 34132772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 34143192 - 34143003
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||||  ||  ||  ||||||||||| ||||||||  | |||  ||||   |||| ||    
T  34143192 ctaaactcatctctctcttagtcttaaatccaatctttattttctgttattgctt--atgcaaacaaaacaatcaaccgcctagcggcaatttaaaagaa 34143095  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  34143094 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aacgatatttttactacttcgatagtatttg 34143003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 35049872 - 35049742
Alignment:
Q  174 caaaataacttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||||||||||| ||||||||||  ||||| ||||||||||||| | |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  35049872 caaaataacttttatacatcctaacttacaacgtaattgaattactgagattaaaatcagtccttatgggaacgatatttttactacttcgatagtattt 35049773  T
Q  273 gataccctt-acaaacgtctatcataattca 302  Q
    | ||| |||  ||||| |||||||| |||||    
T  35049772 ggtacacttgccaaacatctatcattattca 35049742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 20055923 - 20055996
Alignment:
Q  87 ctcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaact 159  Q
    ||||| |||||||||||||| |||| |||||||||||||||||| ||| |||||||||| ||||||||||||||    
T  20055923 ctcatatctctcttattctttaaaatcaatctttattttctgtcgttacttttatgcaatcaaaccaatcaact 20055996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 194
Target Start/End: Complemental strand, 26895577 - 26895468
Alignment:
Q  87 ctcatctctctcttattct-taaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-tt 184  Q
    ||||||||||||||||||| || |||| | ||||||||| | || ||| |||||||||| |||||||||||| | | || | ||||||||||||||| ||    
T  26895577 ctcatctctctcttattctctacaaccgagctttattttttatcgttacttttatgcaatcaaaccaatcaattgcctaatggcaaaacaaaataacttt 26895478  T
Q  185 tatacatcct 194  Q
    ||||||||||    
T  26895477 tatacatcct 26895468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 43492050 - 43492087
Alignment:
Q  235 cttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  43492050 cttgtgggaacgatatttttactacttcgatagtattt 43492087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 14015965 - 14015930
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||||||||||||||||||||||||||||| |||||    
T  14015965 gtggaaacgatatttttactacttcgataggatttg 14015930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 22936766 - 22936732
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  22936766 gtgggaacgatatttttactacttcgatagtattt 22936732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 41306352 - 41306318
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  41306352 gtgggaacgatatttttactacttcgatagtattt 41306318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 41876580 - 41876546
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  41876580 gtgggaacgatatttttactacttcgatagtattt 41876546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 42063226 - 42063260
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  42063226 gtgggaacgatatttttactacttcgatagtattt 42063260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 272
Target Start/End: Complemental strand, 26752521 - 26752493
Alignment:
Q  244 acgatatttttactacttcgatagtattt 272  Q
    |||||||||||||||||||||||||||||    
T  26752521 acgatatttttactacttcgatagtattt 26752493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 53009536 - 53009345
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| | |||| ||||   |||  ||    
T  53009536 ctaaactcatctctctcttattcttaaaaccaatctttaatttctgtcattacttttatgcaaacaaaccaatcaactgcctagtggcaatcaaaagaaa 53009437  T
Q  182 ctttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
     |||||||||||||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||| ||||||||||||||    
T  53009436 ttttatacatcctaacttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactaattcgatagtatttg 53009345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 30392712 - 30392904
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaa-ta 180  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||| ||| |||||||||| |||||||||||||| | |||| ||||| ||||| ||    
T  30392712 ctaaactcatctctctcttattcttaaaaccaa-ctttactttctgtcgttacttttatgcaatcaaaccaatcaactgcctagtggcaaatcaaaaata 30392810  T
Q  181 acttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||| ||||||||||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  30392811 acttttatacatcctaacttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 30392904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 25962202 - 25962391
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||| ||| | |||| ||||| ||||| ||    
T  25962202 ctaaactcatctctctcttattcttaaaaccaatctttattttctgt---tacttttatgcaaacaaaccaatctactgcctagtggcaaatcaaaagaa 25962298  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||||||  ||||| |||| |||||||||| | ||||||| || | ||||||| |||||||||||||||||||||||||||||||    
T  25962299 cttttatacatcctaacttacaacgtagttgaattattgaaattaaaaccactccttgtgggaacgatatttttactacttcgatagtatttg 25962391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 82 - 266
Target Start/End: Complemental strand, 46955456 - 46955273
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||  ||| ||  |||||||||| |||||||||| | |||| |||||  |||| ||    
T  46955456 ctaatctcatctctcttttattcttaaaaccaatctttattttctgttattactt--atgcaaacaacccaatcaactgcctagtggcaaactaaaagaa 46955359  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgata 266  Q
    | ||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  46955358 catttatacatcctaatttacaacgtaattgaattattgagattaaaatcagtccttgtgggaacgatatttttactacttcgata 46955273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 82 - 277
Target Start/End: Original strand, 21419932 - 21420125
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||   || |||||||||||||||||||| |||| | |||| | ||| ||||| ||    
T  21419932 ctaaactcatctctctcttattcttaaaatcaatctttaatttctgt---tacttttatgcaaacaaaccaataaactgcctagtggaaaatcaaaagaa 21420028  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgatac 277  Q
    |||| |||||||  |  ||||| |||| |||||||||| ||||||||| || | |||||||||||||||||||||||||||||||||||||||||||    
T  21420029 cttttatacatcaaaacttacaacgtagttgaattattgagattaaaaccaatccttgtggaaacgatatttttactacttcgatagtatttgatac 21420125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 40493345 - 40493156
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||| |||||||||||||||||||| ||||||| ||| |||   || ||||||| ||||||||||||||||| | |||| ||||| ||||| ||    
T  40493345 ctaaactcatatctctcttattcttaaaaccgatctttaatttatgt---tacttttatgtaaacaaaccaatcaactgcctagtggcaaatcaaaagaa 40493249  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||||||  ||||| |||| |||||||||| ||||||||||||||  |||| | |||||||||||||||||||| ||||||||||    
T  40493248 cttttatacatcctaacttacaacgtagttgaattattgagattaaaatcagtcattgtaggaacgatatttttactacttcaatagtatttg 40493156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 11195819 - 11196005
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||||| | ||||| ||| |||| ||| ||||||||||||||||||||||| ||| |||| ||||| ||||||||    
T  11195819 ctaaactcatctctctcttattcttaaaaccga-ctttactttttgtcgttatttttatgcaaacaaaccaatcaattacctagtggcaaatcaaaataa 11195917  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||| |     ||||| ||| ||||||| ||| ||||||||| |||| ||| ||| |||||||||||||||||||||||||||||||    
T  11195918 cttttatacaac-----ttacaacgtgattgaatgattgagattaaaaccagtccttatgggaacgatatttttactacttcgatagtatttg 11196005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 82 - 295
Target Start/End: Complemental strand, 29544852 - 29544637
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||| |||||||||||||||||| ||| ||||| ||| |||| ||| |||||||||| |||||||||||||| | |||| ||||| |||||||     
T  29544852 ctaaactcatatctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaatcaaaccaatcaactgcctagtggcaaatcaaaatag 29544753  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccct 280  Q
    | ||| |||||||||  ||||| ||||||||||| ||| ||||| ||| |||| ||| ||| ||| ||||||||| ||||||||||||||||| ||| ||    
T  29544752 cttttgtacatcctaacttacaacgtaattgaatgattgagatttaaaccagtccttatgggaacaatatttttattacttcgatagtatttggtacact 29544653  T
Q  281 t-acaaacgtctatca 295  Q
    |  |||||||||||||    
T  29544652 tgccaaacgtctatca 29544637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 18673060 - 18672871
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||  ||  ||  ||||||||||| ||||||||| | |||  |||||  |||| ||    
T  18673060 ctaaactcatctctctcttattctttaaaccaatctttattttatgttattgctt--atgcaaacaaatcaatcaactgcctagcggcaaattaaaagaa 18672963  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| || | ||||||||| |||||||||||||||||||||||||||||    
T  18672962 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccaatccttgtggaa-cgatatttttactacttcgatagtatttg 18672871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 82 - 195
Target Start/End: Original strand, 35510135 - 35510245
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| | |||  |  |||||||||||    
T  35510135 ctaaactcatctctctcttaatcttaaaaccaatctttattttctgtcattacttttatgcaaacaaaccaatcaactgcctag--ggcaaacaaaataa 35510232  T
Q  182 ctttatacatccta 195  Q
     |||||||||||||    
T  35510233 -tttatacatccta 35510245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 277
Target Start/End: Original strand, 15164392 - 15164534
Alignment:
Q  135 ttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa-ctttatacatcctattttacaccgtaattgaattattaagattaaaatcagt 233  Q
    |||||||||||||||| |||||| ||| |||| ||||| |||||||| ||||||||||||||||| | | |||| | ||||| || |||||||||  |||    
T  15164392 ttttatgcaaacaaacaaatcaattacctagtggcaaatcaaaataacctttatacatcctatttaataacgtagtagaattgttgagattaaaaatagt 15164491  T
Q  234 tcttgtggaaacgatatttttactacttcgatagtatttgatac 277  Q
     ||||| | ||||||| |||||||||||||||||| ||||||||    
T  15164492 ccttgtaggaacgata-ttttactacttcgatagtttttgatac 15164534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 18911802 - 18911836
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||||||||||||||||||||||||||||||||||    
T  18911802 gtggaaacgatatttttactacttcgatagtattt 18911836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 29325119 - 29325154
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  29325119 gtgggaacgatatttttactacttcgatagtatttg 29325154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 40616632 - 40616597
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  40616632 gtgggaacgatatttttactacttcgatagtatttg 40616597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 52530759 - 52530724
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  52530759 gtgggaacgatatttttactacttcgatagtatttg 52530724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 34017604 - 34017570
Alignment:
Q  243 aacgatatttttactacttcgatagtatttgatac 277  Q
    |||||||||||||||||||||||||||||| ||||    
T  34017604 aacgatatttttactacttcgatagtatttaatac 34017570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 34319743 - 34319709
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  34319743 gtgggaacgatatttttactacttcgatagtattt 34319709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 40902899 - 40902865
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  40902899 gtgggaacgatatttttactacttcgatagtattt 40902865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 44808781 - 44808747
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  44808781 gtgggaacgatatttttactacttcgatagtattt 44808747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 48637803 - 48637837
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  48637803 gtgggaacgatatttttactacttcgatagtattt 48637837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 82 - 283
Target Start/End: Complemental strand, 17531621 - 17531421
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||||| | |||| ||| |  |||| ||    
T  17531621 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtcatt--gcttatgcaaacaaaccaatcaactgcctagtggcatattaaaagaa 17531524  T
Q  182 -ctttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccct 280  Q
     |||||||||||||| |||| | ||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||| ||    
T  17531523 cctttatacatcctaatttataacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttggtacact 17531424  T
Q  281 tac 283  Q
    |||    
T  17531423 tac 17531421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 82 - 277
Target Start/End: Original strand, 37408910 - 37409106
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||  ||||| ||||| ||||| ||    
T  37408910 ctaaactcatctctctcttattcttaaaatcaatctttattttctgtcattacttttatgcaaacaaaccaatcaactgtttagtggcaaatcaaaagaa 37409009  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgatac 277  Q
    | |||||||||||||  ||||| ||||||||||||||| ||||||||| || |  || ||  ||| ||||||||||||| || ||||||||||||||    
T  37409010 cttttatacatcctagcttacaacgtaattgaattattgagattaaaaccaatcattatgagaacaatatttttactacatccatagtatttgatac 37409106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 91 - 273
Target Start/End: Complemental strand, 34983747 - 34983564
Alignment:
Q  91 tctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt-atac 189  Q
    ||||||||||||||| |||||||||||||| ||| |||| ||| ||||||||||||||||||||||||| | |||| | ||| ||||| |||||| ||||    
T  34983747 tctctctcttattctcaaaaccaatctttaatttatgtcattacttttatgcaaacaaaccaatcaactgcctagtggtaaatcaaaagaacttttatac 34983648  T
Q  190 atcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    || |||  ||||| ||||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  34983647 attctaacttacaacgtaattgaattattgagattaaaatcaatccttgtgggaacgatatttttactacttcgatagtatttg 34983564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 17528726 - 17528536
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||    ||||||||||||||||||||||| | |||| |||||  |||| ||    
T  17528726 ctaatctcatctctctcttattcttaaaaccaatctttattttctgtcatt--gcttatgcaaacaaaccaatcaactgcctagtggcaaattaaaagaa 17528629  T
Q  182 -ctttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
     |||||||||||||| |||| | |||||||| |||||| ||||||||| |||| ||||||| ||||||||||||||||||| |||||||||||    
T  17528628 cctttatacatcctaatttataacgtaattgtattattgagattaaaaccagtccttgtgggaacgatatttttactactttgatagtatttg 17528536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 54720200 - 54720393
Alignment:
Q  82 ctaaactcatctctct--cttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaat 179  Q
    ||||||||||||||||  |||||||| ||| |||||||||| |||||||| ||| ||||||| |||||||||||||||||   |||| ||||| |||||     
T  54720200 ctaaactcatctctctatcttattctcaaa-ccaatctttaatttctgtcattacttttatgtaaacaaaccaatcaactgtctagtggcaaatcaaaag 54720298  T
Q  180 aacttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||||| ||||||||||  ||||| ||||||||||||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||||||    
T  54720299 aacttttatacatcctaacttacaacgtaattgaattattgagattaaaatcagtccttgtaggaacgatatttttactacttcgatagtatttg 54720393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 25442824 - 25442636
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||  |||||  |||| ||    
T  25442824 ctaaactcatctctctcttattcttaaa-ccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagcggcaaattaaaagaa 25442728  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | ||||||||||||| |||||| ||||||||||||||| |||||||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  25442727 cctttatacatcctaatttacaacgtaattgaattattgagattaaaatcaatccttgtgg-aacgatatttttactacttcgatagtatttg 25442636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 82 - 272
Target Start/End: Original strand, 52990929 - 52991118
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||  ||  ||  ||||||| ||||||||||||| | |||| ||||| ||||||||    
T  52990929 ctaaactcatctctctcttattcttaaaaccaatctttattttttgttattgctt--atgcaaataaaccaatcaactgcctagtggcaaatcaaaataa 52991026  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    | |||||||||| || |||||| |||||||||||||||||||||||||||||  ||| |||  |||||||||||||||||||| || |||||    
T  52991027 cctttatacatcttaatttacaacgtaattgaattattaagattaaaatcagaccttatgggcacgatatttttactacttcggtaatattt 52991118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 84 - 273
Target Start/End: Complemental strand, 48063998 - 48063814
Alignment:
Q  84 aaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac- 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||  ||||||||    |||||| || | |||| | |||  |||| |||     
T  48063998 aaactcatctctctcttattcttaaaaccaatctttattttctgtcattgctt--atgcaaac----caatcatctgcctagtggaaaattaaaagaacc 48063905  T
Q  183 tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  48063904 tttatacatcctaatttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 48063814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 233
Target Start/End: Original strand, 17141637 - 17141789
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||  ||| | ||||| ||||| ||    
T  17141637 ctaagctcatctctctcttattcttaaaaccaatctttattttctgtcattacttttgtgcaaacaaaccaatcaactgtttaatggcaaatcaaaagaa 17141736  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagt 233  Q
    | ||||||||||||| |||||| ||||||||| ||||| ||||||||| ||||    
T  17141737 cttttatacatcctaatttacaacgtaattgatttattgagattaaaaccagt 17141789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 83 - 273
Target Start/End: Complemental strand, 32367094 - 32366906
Alignment:
Q  83 taaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac 182  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  ||  ||  ||||||||||| ||||||||| | |||  |||||  |||| |||    
T  32367094 taaactcatctctctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaatcaatcaactgcctagcggcaaattaaaagaac 32366997  T
Q  183 ttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||| |||| || ||  ||||| ||||||||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||    
T  32366996 ttttatacttcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtggaa-cgatatttttactacttcgatagtatttg 32366906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 273
Target Start/End: Original strand, 25486374 - 25486557
Alignment:
Q  94 ctctcttattcttaaaa-ccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa-ctttatacat 191  Q
    ||||||||||||||||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||| |||||||||||||| ||||||||||    
T  25486374 ctctcttattcttaaaagccaatctttattttctgtcgttacttttatgcaatcaaaccaatcaactacctagtggcaaaacaaaataacctttatacat 25486473  T
Q  192 cctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatat--ttttactacttcgatagtatttg 273  Q
    |||   | | | ||   |||||||||| ||||||||| |||| ||||||| ||||||||  |||||||||||| ||||| ||||    
T  25486474 cctgaataataacgcctttgaattattgagattaaaaacagtccttgtgggaacgatattattttactacttcaatagtttttg 25486557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 268
Target Start/End: Original strand, 35751710 - 35751856
Alignment:
Q  122 tttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt-atacatcctattttacaccgtaattgaattattaa 220  Q
    |||||||  ||| |||||||||| ||||| || ||||| | |||| ||||| |||||||||||| ||||||||||||||||| | ||||||||||||| |    
T  35751710 tttctgttgttatttttatgcaa-caaacaaaccaactgcctagtggcaaatcaaaataacttttatacatcctattttacaacataattgaattattga 35751808  T
Q  221 gattaaaatcagttcttgtggaaacgatatttttactacttcgatagt 268  Q
    |||||||||||||  |||||| ||||||||||||||||||||||||||    
T  35751809 gattaaaatcagtctttgtgggaacgatatttttactacttcgatagt 35751856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 22416799 - 22416612
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||    ||||||||||||| ||||||||  | |||  ||||   |||| ||    
T  22416799 ctaaactcatctctctcttattcttaaaaccaatctttattttctgttatt--gcttatgcaaacaaaacaatcaaccgcctagcggcaatttaaaagaa 22416702  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||  ||||||||||||||||||||||    
T  22416701 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aacgata--tttactacttcgatagtatttg 22416612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 46885230 - 46885356
Alignment:
Q  171 aaacaaaataactt-tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagta 269  Q
    |||||||||||||| |||||||||||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||    
T  46885230 aaacaaaataacttctatacatcctaacttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagta 46885329  T
Q  270 tttgataccctt-acaaacgtctatca 295  Q
    |||| ||| |||  |||||||||||||    
T  46885330 tttggtacacttgccaaacgtctatca 46885356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 17039982 - 17039792
Alignment:
Q  87 ctcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa-ctt 184  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||||||| ||||| |||||||| | |||| ||||| |||||||| |||    
T  17039982 ctcatttctctcttattctttaaaaccaatctttattttctgtcattacttttatgcaaccaaacaaatcaactgcctagtggcaaatcaaaataacctt 17039883  T
Q  185 tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatat--ttttactacttcgatagtatttg 273  Q
    ||||||||||   | | | || | |||||||||| ||||| ||| |||| ||||||| ||||||||  ||||||||||| |||||| ||||    
T  17039882 tatacatcctgaataataacgcatttgaattattgagattgaaaacagtccttgtgggaacgatattattttactactttgatagtttttg 17039792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 113 - 273
Target Start/End: Complemental strand, 15195280 - 15195119
Alignment:
Q  113 aatctttattttctgtctttagttttatgcaaac-aaaccaatcaactacttagtagcaaaacaaaataacttt-atacatcctattttacaccgtaatt 210  Q
    ||||||||||| | ||| ||| ||||||||||   ||||||||||||| | || | ||||| ||||| |||||| ||||||||||||||||| |||||||    
T  15195280 aatctttatttcccgtcgttacttttatgcaatttaaaccaatcaactgcctactggcaaa-caaaagaacttttatacatcctattttacaacgtaatt 15195182  T
Q  211 gaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||||||| ||||||||| || | || |||| |||||||||||||||||||||||||||||||    
T  15195181 gaattattgagattaaaaccaatcctcgtgggaacgatatttttactacttcgatagtatttg 15195119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 87 - 266
Target Start/End: Original strand, 27092128 - 27092311
Alignment:
Q  87 ctcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa--ct 183  Q
    ||||||||||| |||||||| ||||||| |||||| ||||| || ||| |||||||||| |||||||||||| |   |||| ||||| ||| ||||   |    
T  27092128 ctcatctctctattattctttaaaaccattctttactttctatcgttacttttatgcaatcaaaccaatcaattgtctagtggcaaatcaatataaactt 27092227  T
Q  184 ttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatat--ttttactacttcgata 266  Q
    ||||||||||||||| | | |||| |||||||||| ||||||||| || ||||||||||||| ||||  ||||||||||||||||    
T  27092228 ttatacatcctatttaataacgtacttgaattattgagattaaaaacaattcttgtggaaac-atattattttactacttcgata 27092311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 82 - 270
Target Start/End: Complemental strand, 12561199 - 12561004
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtcttta-gtt------ttatgcaaacaaaccaatcaactacttagtagcaaaac 174  Q
    ||||||||||||||||||||||||| |||||||||||||| |  |   |||| |||      ||||||||||||||||||||||| | |||  |||||      
T  12561199 ctaaactcatctctctcttattctttaaaccaatctttatatctttattttatgttaattgcttatgcaaacaaaccaatcaactgcctagcggcaaatt 12561100  T
Q  175 aaaataacttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtat 270  Q
    |||| |||||| ||||||| ||  ||| | |||| |||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||| |||||    
T  12561099 aaaagaacttttatacatcttaagttataacgtagttgaattattgagattaaaaccagtccttgtggaa-cgatatttttactacttcgacagtat 12561004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 273
Target Start/End: Original strand, 11785110 - 11785194
Alignment:
Q  190 atcctatttta-caccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||||||||| || ||||||||||||||| ||||||||  |||| ||||||| | ||||||||||||||||| |||||||||||    
T  11785110 atcctattttaacaacgtaattgaattattgagattaaatccagtccttgtgggagcgatatttttactactttgatagtatttg 11785194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 46885169 - 46885236
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaa 149  Q
    ||||||||||||||||| ||||||||||| ||||||||| ||| |||| ||| |||||||||||||||    
T  46885169 ctaaactcatctctctcctattcttaaaatcaatctttactttttgtcgttacttttatgcaaacaaa 46885236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 28008036 - 28007968
Alignment:
Q  82 ctaaactcatctctctcttattcttaa-aaccaatctttattttctgtctttagttttatgcaaacaaa 149  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||||| ||||    
T  28008036 ctaatctcatctctctcttattctttagaaccaatctttattttctgtcattacttttatgcaatcaaa 28007968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 11190900 - 11190942
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  11190900 cagttctcgtgggaacgatatttttactacttcgatagtattt 11190942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 16184495 - 16184461
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||||||||||||||||||||||||||||||||||    
T  16184495 gtggaaacgatatttttactacttcgatagtattt 16184461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 2873925 - 2873980
Alignment:
Q  216 attaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||||||||| | |||| || |||| ||||||||||||||||||||||||||||||    
T  2873925 attaagattaaca-cagtcctcgtgggaacgatatttttactacttcgatagtattt 2873980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 50461362 - 50461327
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  50461362 gtgggaacgatatttttactacttcgatagtatttg 50461327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 539208 - 539242
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  539208 gtgggaacgatatttttactacttcgatagtattt 539242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 2775868 - 2775910
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||    
T  2775868 cagtccttgtgggaacgatatttttattacttcgatagtattt 2775910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 2779110 - 2779152
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||    
T  2779110 cagtccttgtgggaacgatatttttattacttcgatagtattt 2779152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 6922902 - 6922936
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  6922902 gtgggaacgatatttttactacttcgatagtattt 6922936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 7486945 - 7486987
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||    
T  7486945 cagtccttgtgggaacgatatttttattacttcgatagtattt 7486987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 10106412 - 10106378
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  10106412 gtgggaacgatatttttactacttcgatagtattt 10106378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 24125881 - 24125915
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  24125881 gtgggaacgatatttttactacttcgatagtattt 24125915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 30691117 - 30691151
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  30691117 gtgggaacgatatttttactacttcgatagtattt 30691151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 35412887 - 35412921
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  35412887 gtgggaacgatatttttactacttcgatagtattt 35412921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 8461301 - 8461272
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  8461301 aacgatatttttactacttcgatagtattt 8461272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Original strand, 24129163 - 24129192
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  24129163 aacgatatttttactacttcgatagtattt 24129192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 28266300 - 28266332
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtat 270  Q
    |||| ||||||||||||||||||||||||||||    
T  28266300 gtgggaacgatatttttactacttcgatagtat 28266332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 82 - 295
Target Start/End: Original strand, 64003 - 64218
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||| |||| ||||| ||| ||| |||| ||| ||||||||||||| ||||||||||| | |||| ||||| ||||||||    
T  64003 ctaaactcatctctctcttattctaaaaatcaatccttactttttgtcgttacttttatgcaaacataccaatcaactgcctagtggcaaatcaaaataa 64102  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccct 280  Q
    | ||||||||||||   ||||| ||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||| ||||||||||| ||| ||    
T  64103 cttttatacatccttacttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactactttgatagtatttggtacact 64202  T
Q  281 t-acaaacgtctatca 295  Q
    |  |||||||||||||    
T  64203 tgccaaacgtctatca 64218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 88 - 273
Target Start/End: Original strand, 19476154 - 19476338
Alignment:
Q  88 tcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-ttta 186  Q
    |||||||||||||||||||||||||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||  |||||  |||| ||| ||||    
T  19476154 tcatctctctcttattcttaaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagcggcaaattaaaagaaccttta 19476251  T
Q  187 tacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||||||| |||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  19476252 tacatcctaatttacaacgtaattgaattattgagattaaaatcagtccttgtgggaacgatatttttactacttcgatagtatttg 19476338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 82 - 296
Target Start/End: Original strand, 4512622 - 4512837
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||||||| ||||| ||| | || ||| |||||||||| |||||||||||||| | |||| |||||  |||||||    
T  4512622 ctaaactcatctctctcttattcttaaaaccaa-ctttactttatttcgttaattttatgcaatcaaaccaatcaactgcctagtggcaaataaaaataa 4512720  T
Q  182 cttta-tacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccct 280  Q
    ||||  |||||||||  ||||| ||||||||||||||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||| ||    
T  4512721 cttttgtacatcctaacttacaacgtaattgaattattgaaattaaaatcagtccttgtgggaacgatatttttactacttcgatagtattcggtacact 4512820  T
Q  281 tac-aaacgtctatcat 296  Q
    | | |||||||||||||    
T  4512821 tgcgaaacgtctatcat 4512837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 24400325 - 24400515
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||  |||||  |||| ||    
T  24400325 ctaaactcatctctctcttattcttaaaatcaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagcggcaaattaaaagaa 24400422  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||||||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  24400423 cctttatacatcctaagttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 24400515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 24410444 - 24410634
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||  |||||  |||| ||    
T  24410444 ctaaactcatctctctcttattcttaaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagcggcaaattaaaagaa 24410541  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||| ||||||  ||||| |||||||||||| || ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  24410542 cctttatatatcctaagttacaacgtaattgaattgttgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagtatttg 24410634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 24155344 - 24155154
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||   ||||  |||| ||    
T  24155344 ctaaactcatctctctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagcgacaaattaaaagaa 24155247  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | ||||||||||||| |||||| ||||||||||||||| ||||||||| || | ||| ||| |||||||||||||||||||||||||||||||    
T  24155246 cctttatacatcctaatttacaacgtaattgaattattgagattaaaaccaatccttatgggaacgatatttttactacttcgatagtatttg 24155154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 26896237 - 26896045
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||| |||| |||| ||| |||  ||| ||||||  ||||||||||||||||| | |||| | ||| ||||||||    
T  26896237 ctaaactcatctctctcttattcttaaaatcaatgtttaatttttgttgttacttttattgaaacaaaccaatcaactgcctagtggaaaatcaaaataa 26896138  T
Q  182 ctt-tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||| |||||||||||  ||||| |||||||||| |||| ||||||||| |||| | ||||| ||||||||||||||||||| |||||||||||    
T  26896137 cttctatacatcctaacttacaacgtaattgaactattgagattaaaaccagtccctgtgggaacgatatttttactactttgatagtatttg 26896045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 18856003 - 18855814
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||  || ||  |||| ||    
T  18856003 ctaaactcatctctctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagcggccaattaaaagaa 18855906  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||| ||  ||||| || |||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  18855905 cttttatacatcttaagttacaacggaattgaattattgagattaaaaccagtccttgtgg-aacgatatttttactacttcgatagtatttg 18855814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 32109819 - 32110007
Alignment:
Q  87 ctcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac--tt 184  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||| ||||| |||| |||||| ||||||| | |||| |||||||||||||||  ||    
T  32109819 ctcatctctcttttattcttaaaaccaatctttattttctgtcgttacttttacgcaatcaaacccatcaacttcctagtggcaaaacaaaataaccttt 32109918  T
Q  185 tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||  | | | |||||| ||||| |  ||||||||| |||| |||||||  ||||||||||||||||||||||||| ||||    
T  32109919 tttacatcctaagtaataacgtaatagaattgtggagattaaaaacagtccttgtgggtacgatatttttactacttcgatagtttttg 32110007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 13947164 - 13947349
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||  |||||  |||| ||    
T  13947164 ctaaactcatctatctcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagcggcaaattaaaagaa 13947261  T
Q  182 ctttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||    ||| ||  ||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  13947262 ctttt---atcttaagttacaacgtaattgaattattgagattaaaatcagtccttgtgg-aacgatatttttactacttcgatagtatttg 13947349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 7128445 - 7128634
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||| || |||||||||||||  ||  ||  ||||||||||| ||||||||| | |||  |||||  |||| ||    
T  7128445 ctaaactcatctctctcttattctttaaactaaactttattttctgttattgctt--atgcaaacaaatcaatcaactgcctagcggcaaattaaaagaa 7128542  T
Q  182 cttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| ||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  7128543 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aacgatatttttactacttcgatagtatttg 7128634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 28230741 - 28230931
Alignment:
Q  82 ctaaactcat-ctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    |||||||||| |||| |||||||||| |||||||||||||||||||||  ||  ||  ||||||||||| |||||||||   |||  |||||  |||| |    
T  28230741 ctaaactcattctctatcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaatcaatcaactgtctagcggcaaattaaaaga 28230838  T
Q  181 ac-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    || |||||||||| ||  ||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  28230839 acttttatacatcttaagttacaacgtaattgaattattgagattaaaatcagtccttgtgg-aacgatatttttactacttcgatagtatttg 28230931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 89 - 277
Target Start/End: Complemental strand, 11125668 - 11125478
Alignment:
Q  89 catctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa--cttta 186  Q
    ||||||| ||||||||||||||||||||||||| || |||| ||| ||||||| || |||||||||||  | | |||| ||||| ||||||||   |||     
T  11125668 catctctatcttattcttaaaaccaatctttatattttgtcattatttttatgtaatcaaaccaatcagatgcctagtggcaaatcaaaataatcttttt 11125569  T
Q  187 tacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgatac 277  Q
    |||||||||  | | |  ||| | ||||| || ||||||||| |||| ||||||| || ||||||||||||||||||||| | ||||||||    
T  11125568 tacatcctaagtaataatgtactagaattgttgagattaaaaacagtccttgtgggaatgatatttttactacttcgataatttttgatac 11125478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 185
Target Start/End: Complemental strand, 22561136 - 22561037
Alignment:
Q  87 ctcatctctctcttattctta-aaaccaatctttattttctgtct-ttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataactt 184  Q
    ||||||||||||||||||||  |||||||||||||||||||||   ||| |||||||||| |||||||||||||| | |||  | |||||||||||||||    
T  22561136 ctcatctctctcttattcttttaaaccaatctttattttctgttagttacttttatgcaatcaaaccaatcaactgcctag-ggtaaaacaaaataactt 22561038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 5737896 - 5737854
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  5737896 cagtccttgcggaaacgatatttttactacttcgatagtattt 5737854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 3596607 - 3596571
Alignment:
Q  236 ttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||||| ||||||||||||||||||||||||||||||    
T  3596607 ttgtgggaacgatatttttactacttcgatagtattt 3596571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 2379528 - 2379563
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  2379528 gtgggaacgatatttttactacttcgatagtatttg 2379563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 9954260 - 9954294
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  9954260 gtgggaacgatatttttactacttcgatagtattt 9954294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 11729164 - 11729122
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||    
T  11729164 cagtttttgtgggaacgatatttttattacttcgatagtattt 11729122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 30655747 - 30655789
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||    
T  30655747 cagtccttgtgggaacgatatttttattacttcgatagtattt 30655789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 1125556 - 1125527
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  1125556 aacgatatttttactacttcgatagtattt 1125527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 27354922 - 27354729
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaa-ccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||||| ||||||||| | |||| ||||| ||||| |    
T  27354922 ctaaactcatctctcttttattcttaaaaaccaatctttattttctgtcattacttttatgcaaacaaatcaatcaactgcctagtggcaaatcaaaaga 27354823  T
Q  181 acttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||| |||||||||||||| || | ||||||||||||| ||||||||| || |  | |||| |||||||||||||||||||||||||||||||    
T  27354822 acttttatacatcctattttgcaacataattgaattattgagattaaaaacaatcatcgtgggaacgatatttttactacttcgatagtatttg 27354729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 84 - 296
Target Start/End: Complemental strand, 905661 - 905447
Alignment:
Q  84 aaactcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac 182  Q
    |||||||||||||| |||||||| |||||||| ||||| ||| | || ||| ||||||||||||||||||||||| | | ||||  |||| |||||||||    
T  905661 aaactcatctctcttttattctttaaaaccaa-ctttactttttatcgttacttttatgcaaacaaaccaatcaaatgcctagtgtcaaatcaaaataac 905563  T
Q  183 ttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccctt 281  Q
    ||| ||||||||||  ||||| ||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||    
T  905562 ttttatacatcctaacttacaacgtaattgaattattgagattataatcagtccttgtgggaacgatatttttactacttcgatagtatttgatacactt 905463  T
Q  282 a-caaacgtctatcat 296  Q
    | ||||| ||||||||    
T  905462 atcaaacatctatcat 905447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 87 - 268
Target Start/End: Complemental strand, 673043 - 672861
Alignment:
Q  87 ctcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa-ctt 184  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||| |||||| ||| |||||||||||||| | ||||  |||||||||| || |||    
T  673043 ctcatctctctcttattctttaaaaccaatctttattttatgtcgttacttttatccaatcaaaccaatcaactgcctagtgacaaaacaaaagaacctt 672944  T
Q  185 tatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagt 268  Q
    |||||||||||||| | | |||| ||||||| || ||||||||| || | ||||||| ||| ||| ||||||||||||||||||    
T  672943 tatacatcctatttaataacgtacttgaattgttgagattaaaaacaatccttgtgggaacaata-ttttactacttcgatagt 672861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 29643199 - 29643150
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaa---tctttattttctgt 128  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||    
T  29643199 ctaaactcatctctctcttattcttaaaaccaactttctttattttctgt 29643150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 20448122 - 20448164
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  20448122 cagtccttgtgggaacgatatttttactacttcgatagtattt 20448164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 20533889 - 20533931
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  20533889 cagtccttgtgggaacgatatttttactacttcgatagtattt 20533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Complemental strand, 45960571 - 45960536
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  45960571 gtgggaacgatatttttactacttcgatagtatttg 45960536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 1950272 - 1950238
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  1950272 gtgggaacgatatttttactacttcgatagtattt 1950238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 2794525 - 2794559
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  2794525 gtgggaacgatatttttactacttcgatagtattt 2794559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 20399143 - 20399185
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||||| |||| |||||||||||||||||||| |||||||||    
T  20399143 cagttctcgtgggaacgatatttttactacttccatagtattt 20399185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 28111354 - 28111388
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  28111354 gtgggaacgatatttttactacttcgatagtattt 28111388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 33898621 - 33898659
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagt 268  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  33898621 cagtccttgtgggaacgatatttttactacttcgatagt 33898659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 23021741 - 23021712
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  23021741 aacgatatttttactacttcgatagtattt 23021712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 272
Target Start/End: Complemental strand, 27536352 - 27536323
Alignment:
Q  243 aacgatatttttactacttcgatagtattt 272  Q
    ||||||||||||||||||||||||||||||    
T  27536352 aacgatatttttactacttcgatagtattt 27536323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 82 - 282
Target Start/End: Complemental strand, 58659 - 58459
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||| |||||||||||||||| ||||||||| ||| |||  ||| ||||||||||||||||||||||||| | |||| ||||| ||||||||    
T  58659 ctaaactcatctatctcttattcttaaaatcaatctttactttttgttgttacttttatgcaaacaaaccaatcaactgcctagtggcaaatcaaaataa 58560  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttgataccct 280  Q
    | ||||||| |||||  ||||| ||||||| ||||||| ||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| ||| ||    
T  58559 cttttatacgtcctaacttacaacgtaatttaattattgagattaaaa-cagtccttttgggaacgatatttttactacttcgatagtatttggtacact 58461  T
Q  281 ta 282  Q
    ||    
T  58460 ta 58459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 58395 - 58321
Alignment:
Q  85 aactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaact 159  Q
    |||||||||||||||||||||||||| ||||||||| ||| | |  ||| |||||||||||||||||||||||||    
T  58395 aactcatctctctcttattcttaaaatcaatctttactttttattgttacttttatgcaaacaaaccaatcaact 58321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 58458 - 58418
Alignment:
Q  233 ttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  58458 ttcttgtgggaacgatatttttactacttcaatagtatttg 58418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 93 - 273
Target Start/End: Original strand, 4069 - 4250
Alignment:
Q  93 tctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt-atacat 191  Q
    |||||||||||||||||| ||| ||||| ||| |||| ||| |||||||||||||||| |||||||| | |||| ||||| |||||||||||| ||||||    
T  4069 tctctcttattcttaaaatcaacctttactttttgtcgttacttttatgcaaacaaacaaatcaacttcctagtggcaaatcaaaataacttttatacat 4168  T
Q  192 cctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||  ||||| | ||||||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||    
T  4169 cctaacttacaacataattgaattattgagattaaaatcagtccttgtgggaacaataattttactacttcgatagtatttg 4250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 10557 - 10741
Alignment:
Q  86 actcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataacttt 185  Q
    ||||||||||||||||||||||||||||||||||| |||||||   || ||||||| ||||||||||||||||| | |||| ||||  ||||| ||||||    
T  10557 actcatctctctcttattcttaaaaccaatctttaatttctgt---taattttatgtaaacaaaccaatcaactgcctagtggcaat-caaaagaacttt 10652  T
Q  186 -atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
     ||||||||||  ||||| |||| |||||||||| ||||||||| |||| ||||||| |||  ||||||||||||||||||||||||||    
T  10653 tatacatcctaacttacaacgtagttgaattattgagattaaaaccagtccttgtgggaacattatttttactacttcgatagtatttg 10741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 15556 - 15745
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||| |||  ||||||||||||||||  |||   ||||||||||||||||||||||| | |||  |||||  |||| ||    
T  15556 ctaaactcatctctctcttattctttaaatgaatctttattttctgttatta--cttatgcaaacaaaccaatcaactgcctagcggcaaattaaaagaa 15653  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||| ||  ||||| ||||||||||||||| ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  15654 cttttatacatcttaagttacaacgtaattgaattattgagattaaaaccagtccttgtgg-aacgatatttttactacttcgatagtatttg 15745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 268
Target Start/End: Original strand, 19424 - 19609
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||| ||| | ||||||| |||  ||  ||  ||||||||||||||||||||| | |||  |||||  |||| ||    
T  19424 ctaaactcatctctctcttattcttaaaatcaaacgttattttttgttattgctt--atgcaaacaaaccaatcaactgcctagcggcaaattaaaagaa 19521  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagt 268  Q
    | ||||||||||||| |||||| ||||||||||||||| ||||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  19522 cctttatacatcctaatttacaacgtaattgaattattgagattaaaaccagtccttgtgggaacgatatttttactacttcgatagt 19609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 82 - 268
Target Start/End: Original strand, 29509 - 29688
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||  ||  ||  |||||||||||||||||||||   |||  |||||  |||| ||    
T  29509 ctaaactcatctctctcttattcttaaaaccaaactttattttttgttattgctt--atgcaaacaaaccaatcaactgtctagcggcaaattaaaagaa 29606  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagt 268  Q
    | ||||||||    |      | ||||||||||||||| |||||||||  ||| ||||||| ||||||||||||||||||||||||||    
T  29607 cctttatacaaaaca------aacgtaattgaattattgagattaaaactagtccttgtgggaacgatatttttactacttcgatagt 29688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 2051 - 1860
Alignment:
Q  82 ctaaactcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    |||| ||||| |||||||||||||| |||||||| ||||| ||| |||| |||  |||||||||||||||||||||||  | |||| ||||  ||||| |    
T  2051 ctaagctcatatctctcttattctttaaaaccaa-ctttactttatgtcgttacatttatgcaaacaaaccaatcaaccgcctagtggcaat-caaaaca 1954  T
Q  181 acttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||| | ||||||||  ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  1953 acttttaaacatcctaacttacaacgtaattgaattattgagattaaaatcagttcttgtgggaacgatatttttaccacttcgatagtatttg 1860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 82 - 273
Target Start/End: Original strand, 31239 - 31428
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa 181  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||  ||  ||  ||||||||||| |||||||||   |||  |||||  |||| ||    
T  31239 ctaaactcatctctatcttattctttaaaccaatctttattttctgttattgctt--atgcaaacaaatcaatcaactgtctagcggcaaattaaaagaa 31336  T
Q  182 c-tttatacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    | |||||||||| ||  ||||| ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  31337 cttttatacatcttaagttacaacgtaattgaattattgagattaaaatcagtccttgtgg-aacgatatttttactacttcgatagtatttg 31428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 87 - 268
Target Start/End: Complemental strand, 14292 - 14112
Alignment:
Q  87 ctcatctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataa-cttt 185  Q
    ||||||||||| ||||||||||||||||||||||||||||||  ||  ||  ||||||||||||||||||||| | |||| | |||  |||| || ||||    
T  14292 ctcatctctcttttattcttaaaaccaatctttattttctgttattgctt--atgcaaacaaaccaatcaactgcctagtggaaaattaaaagaatcttt 14195  T
Q  186 atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagt 268  Q
    |||||||||| |||||  ||||||||||||||| ||||||||| || | ||||||| |  |||||||||||||||||||||||    
T  14194 atacatcctaatttacgacgtaattgaattattgagattaaaaccaatccttgtgggatagatatttttactacttcgatagt 14112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 57562 - 57453
Alignment:
Q  87 ctcatctctctcttattctt-aaaaccaatctttattttctgtctttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaataac-tt 184  Q
    |||||||||||||||||||| |||||||||| ||||||| |||| ||| |||||||||| |||||||||||||| | |||||||||||||||||||| ||    
T  57562 ctcatctctctcttattctttaaaaccaatccttatttt-tgtcgttacttttatgcaatcaaaccaatcaactgcctagtagcaaaacaaaataacttt 57464  T
Q  185 tatacatccta 195  Q
    |||||||||||    
T  57463 tatacatccta 57453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 82 - 273
Target Start/End: Complemental strand, 65301 - 65110
Alignment:
Q  82 ctaaactcatctctctcttattcttaaaaccaatctttattttctgtct-ttagttttatgcaaacaaaccaatcaactacttagtagcaaaacaaaata 180  Q
    ||||||||||||||||||||||||||| || || | |||||| ||||   ||| |||||||||| | || ||||||| | | |||| ||||| ||||| |    
T  65301 ctaaactcatctctctcttattcttaacacaaa-cattattt-ctgttagttaattttatgcaatcgaatcaatcaaattcctagtggcaaatcaaaaga 65204  T
Q  181 acttt-atacatcctattttacaccgtaattgaattattaagattaaaatcagttcttgtggaaacgatatttttactacttcgatagtatttg 273  Q
    ||||| ||||||||||||||||| || ||||||| |||| ||||||||| ||||  | |||| ||||||||||||||||||| |||||||||||    
T  65203 acttttatacatcctattttacaacgcaattgaaatattgagattaaaaacagtcatcgtgggaacgatatttttactacttggatagtatttg 65110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 2942 - 2854
Alignment:
Q  91 tctctctcttattcttaaaaccaatctttattttctgtctttagttttatgcaaac-aaaccaatcaactacttagtagcaaaacaaaa 178  Q
    |||||||||||||||  ||||||||||||| |||||||| ||| |||||||||||| ||| ||||||||| | |||| ||||| |||||    
T  2942 tctctctcttattctctaaaccaatctttaatttctgtcattacttttatgcaaacaaaaacaatcaacttcctagtggcaaatcaaaa 2854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1208 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1208
Description:

Target: scaffold1208; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 472 - 514
Alignment:
Q  230 cagttcttgtggaaacgatatttttactacttcgatagtattt 272  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  472 cagttctcgtgggaacgatatttttactacttcgatagtattt 514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 273
Target Start/End: Original strand, 19693 - 19728
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtatttg 273  Q
    |||| |||||||||||||||||||||||||||||||    
T  19693 gtgggaacgatatttttactacttcgatagtatttg 19728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 3107 - 3073
Alignment:
Q  238 gtggaaacgatatttttactacttcgatagtattt 272  Q
    |||| ||||||||||||||||||||||||||||||    
T  3107 gtgggaacgatatttttactacttcgatagtattt 3073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University