View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_29 (Length: 395)
Name: NF13139_low_29
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 377
Target Start/End: Original strand, 31042442 - 31042807
Alignment:
| Q |
12 |
atgaacatacgggtcatatatgtataaaaaatgaagaaatcatctgcatatatgatgctatccaaaattggtaaaaggttaaaaagcagaattcatacaa |
111 |
Q |
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| T |
31042442 |
atgaacatacgggtcatatatgtctaaaaaatgaagaaatcatctgcatatatgatgctatccaaaattggtaaaaggttaaaaagcagaattcatacaa |
31042541 |
T |
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| Q |
112 |
aattctatccaaaattttggttttcattaaaagtgacatataagtggtgatagtttactctaatggtgctgactacttgtagttctcaattatcttattt |
211 |
Q |
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| T |
31042542 |
aattctatccaaaattttggttttcattaaaagtgacatataagtggtgatagtttactctaatggtgctgactacttgtagttctcaattgtcttattt |
31042641 |
T |
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| Q |
212 |
attctattcaactatatgagtggtgatattttcactatttctgctaggtctttgatatttgtgaaatagattaagaggatcatcggcttttgcgacatag |
311 |
Q |
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| T |
31042642 |
attctattcaactatatgagtggtgatagtttcactatttctgctaggtctttgatatttgtgaaatagattaagaggatcatcggcttttgcgacatag |
31042741 |
T |
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| Q |
312 |
ttcgtcgacgcctccaccttgcacgcacaacacataggccgttgatatcctttgaagttgctgcat |
377 |
Q |
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| T |
31042742 |
ttcgtcgacgcctccaccttgcacgcacaacacataggccgttgatatcctttgaagttgctgcat |
31042807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 204 - 311
Target Start/End: Original strand, 31107925 - 31108032
Alignment:
| Q |
204 |
tcttatttattctattcaactatatgagtggtgatattttcactatttctgctaggtctttgatatttgtgaaatagattaagaggatcatcggcttttg |
303 |
Q |
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| T |
31107925 |
tcttatttattctcttcaactatatgagtggtgatagtttcatgatttctgctaggtctttgatgtttgttgaatacattaagagaatcatcggcttttg |
31108024 |
T |
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| Q |
304 |
cgacatag |
311 |
Q |
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| T |
31108025 |
caacatag |
31108032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 165 - 269
Target Start/End: Original strand, 31106237 - 31106345
Alignment:
| Q |
165 |
tttactctaatggtgctgactact----tgtagttctcaattatcttatttattctattcaactatatgagtggtgatattttcactatttctgctaggt |
260 |
Q |
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| T |
31106237 |
tttactctaatggtgctgacaactagcttgtagttttccatcatcttatttagtctcttcaactatatgagtgctgatagtttcagtatttctgctaggt |
31106336 |
T |
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| Q |
261 |
ctttgatat |
269 |
Q |
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| T |
31106337 |
ctttgatat |
31106345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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