View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_36 (Length: 312)
Name: NF13139_low_36
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 50260767 - 50261047
Alignment:
| Q |
1 |
cataaaactacaattatttatttatagtaaacataagatagattacatgaccaaatagtgtcatttgaacaatttatttgattgttatacaaa-gtgtat |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
50260767 |
cataaaactacaattatttatttatagtaaacataagatagattacatgaccaaatagtgtcatttgaacaatttatttgatttttatacaaaagtgtat |
50260866 |
T |
|
| Q |
100 |
atgaaggatattgatggattattttatttcaaaaaatctagcaactcatacaaagtaccagccccgtacttttgggagtgcaaaccgtttaactgagctg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
50260867 |
atgaaggatattgatggattattttatttcaaaaaatctagcaactcatacacagtaccagccccgtacttttgggagtgcaaacaatttaattgagctg |
50260966 |
T |
|
| Q |
200 |
gacctccaaaaataacgagccacaagaaaaagaaattagagttttacttttcccacctaatgtatttcctcgtgctcccta |
280 |
Q |
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||||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |
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| T |
50260967 |
gacctccaaaagtaacaggcctcaagaaaaagaaattagagttttacttttcccgcctaatgtctttcctcgcgcgcccta |
50261047 |
T |
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