View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13139_low_37 (Length: 303)
Name: NF13139_low_37
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_37 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 291
Target Start/End: Original strand, 25030492 - 25030772
Alignment:
| Q |
11 |
cacagacaaatcaaacttgttacccaccatgtttttgagatgttggctctcctgtggtacttgcagagactccgacgatcaagttagtaaagaattcaat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25030492 |
cacaaacaaatcaaacttgttacccaccatgtttttgagatgttggctctcctgtggtacttgcagagactccgacgatcaagttagtaaagaattcaat |
25030591 |
T |
|
| Q |
111 |
aacaggacaataattttgatnnnnnnnngaacagatcatgcattaataattaagaaatgaagattaaccatggtaaatttgttcatacctttcttaccta |
210 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25030592 |
aacaggacaataattttgataaaaataagaacagatcatgcattaataattaacaaatgaagattaaccatggtaaatttgttcttacctttcttaccta |
25030691 |
T |
|
| Q |
211 |
cacagaagcagcgatttattataaatttgttaccattcttaacggagtgacatcaaaattctcattttcttttttctttct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25030692 |
cacagaagcagcgatttattataaatttgttacctttcttaacggagtgacatcaaaattctcattttcttttttctttct |
25030772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University