View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_38 (Length: 292)
Name: NF13139_low_38
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 50558296 - 50558122
Alignment:
| Q |
108 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcattttttgaccactgtaacaggtttgtgaaaaaagtcctcgtcttcgt |
207 |
Q |
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| T |
50558296 |
gatactgtgtttaaatcacaattttttaagcacacatgtttatgcatttgtcgttttttgaccactgtaacaggtttgtgaaaaaagtcctcgtcttcgt |
50558197 |
T |
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| Q |
208 |
gatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacgagatgtctgtg |
282 |
Q |
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| T |
50558196 |
gatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacgagatgtctgtg |
50558122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 50558403 - 50558343
Alignment:
| Q |
1 |
tttttgctctatgtttctgtgctgtatgtacgattttcattgtagtctatgttccttgcag |
61 |
Q |
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| T |
50558403 |
tttttgctctatgtttctgtgctgtatgtacgattttcattgtagtctatgttccttgcag |
50558343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 278
Target Start/End: Complemental strand, 50568381 - 50568275
Alignment:
| Q |
172 |
ctgtaacaggtttgtgaaaaaagtcctcgtcttcgtgatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacg |
271 |
Q |
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||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||||||||||| | || |||||||||||||| ||||| ||||| |
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| T |
50568381 |
ctgtaacaggtttgtaaaaacagtccttttcttggtgatacagaccacttatttcttgagcttcctgtattgaaagataaattggagaaatacatcaaca |
50568282 |
T |
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| Q |
272 |
agatgtc |
278 |
Q |
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| T |
50568281 |
agatgtc |
50568275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 282
Target Start/End: Complemental strand, 29770548 - 29770439
Alignment:
| Q |
173 |
tgtaacaggtttgtgaaaaaagtcctcgtcttcgtgatacagaccacttatttcttgagcttcctctgttcaaagataaattggaaaaatatgtcaacga |
272 |
Q |
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|||||||||||||| ||| ||||||||| || ||||||| |||||||||||||||||||| ||||| || ||||||| ||| ||||||| |||| || |
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| T |
29770548 |
tgtaacaggtttgtcgaaatagtcctcgtatttgtgatacggaccacttatttcttgagctccctcttttggaagataagttgcaaaaatacatcaatga |
29770449 |
T |
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| Q |
273 |
gatgtctgtg |
282 |
Q |
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| T |
29770448 |
gatgtctgtg |
29770439 |
T |
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