View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_39 (Length: 265)
Name: NF13139_low_39
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 28940072 - 28940327
Alignment:
| Q |
1 |
ctatttggataagaacaaacttttgaggtaaaa-ccaaaagggtatggggtaaactaactgagagagatgtaagtatcttgaaaagatggtttctcatgc |
99 |
Q |
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| T |
28940072 |
ctatttggataagaacaaacttttgaggtaaaaaccaaaagggtatggggtaaactaactgagagagatgtaagtatcttgaaaagatggtttctcatgc |
28940171 |
T |
|
| Q |
100 |
aagtttcagagaatatgatggtgtgtgttttgttggcactatgtagcttaaatatgagtctaatgtgttttggaattcagtgagtgtgtcatatatgaga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940172 |
aagtttcagagaatatgatggtgtgtgttttgttggcactatgtagcttaaatatgagtctaatgtgttttggaattcagtgagtgtgtcatatatgaga |
28940271 |
T |
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| Q |
200 |
aacaaatttagctggaaaagcacataagaatttctatatggcagagttggtctgtg |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940272 |
aacaaatttagctggaaaagcacataagaatttctatatggcagagttggtctgtg |
28940327 |
T |
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