View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_4 (Length: 605)
Name: NF13139_low_4
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 573; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 37419164 - 37419760
Alignment:
| Q |
1 |
cgaacctttaaatcctttaaaaccagagtctccagacatgatgattttaaaagtaaacctaacaaaacttcacagttaacaaagagtagctgcaaatgac |
100 |
Q |
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| T |
37419164 |
cgaacctttaaatcctttaaaaccagagtctccagacatggtgattttaaaagtaaacctaacaaaacttcacagttaacaaagagtagctgcaaatgac |
37419263 |
T |
|
| Q |
101 |
gcaacattccaaatgccggaatatcagctaaacaatgtttcatttgtgcaggatctaggaaagcatagggagcctgtcatgttagaacaacgattatgaa |
200 |
Q |
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| T |
37419264 |
gcaacattccaaatgccggaatatcagctaaacaatatttcatttgtgcaggatctaggaaagcatagggagcctgtcatgttagaacaacgattatgaa |
37419363 |
T |
|
| Q |
201 |
attatccaagagatagagtaaatgaaatgaaccattagacaatttttcactagtgaaagttcaaaacttcataatcatataatatgctaaagtattttaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419364 |
attatccaagagatagagtaaatgaaatgaaccattagacaatttatcactagtgaaagttcaaaacttcataatcatataatatgctaaagtattttaa |
37419463 |
T |
|
| Q |
301 |
tcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaatttagttatttactttgatacaacaatgtaaatttcttc |
400 |
Q |
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| T |
37419464 |
tcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaatttagttatttactttgatacaacaatgtaaatttcttc |
37419563 |
T |
|
| Q |
401 |
ttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaagccgtaaacattccacattaataatactgaaaagcttgcg |
500 |
Q |
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| T |
37419564 |
ttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaagccgtaaacattccacattaataatactgaaaagcttgcg |
37419663 |
T |
|
| Q |
501 |
aacaaaaacccccatttgttgcacactcttgacctttgaagttattagagaaatatcagccttcgcaacgtgtgcatctagtaaaatggtctctgct |
597 |
Q |
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| T |
37419664 |
aacaaaaatccccatttgttgcacgctcttgacctttgaagttattagagaaatatcagccttcgcaacatgtgcatctagtaaaatggtctctgct |
37419760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 37427649 - 37427902
Alignment:
| Q |
1 |
cgaacctttaaatcctttaaaaccagagtctccagacatgatgattttaaaagtaaacctaacaaaacttcacagttaacaaagagtagctgcaaatgac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
37427649 |
cgaacctttaaatcctttaaaaccagagtctccagacacggtgattttaaaagtaaacctaacaaaatttcacagttaacaaagagtagatgcaaatgac |
37427748 |
T |
|
| Q |
101 |
gcaacattccaaatgccggaatatcagctaaacaatgtttcatttgtgcaggatctaggaaagcatagggagcctg-tcatgttagaacaac-gattatg |
198 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||| ||| ||||||||||||||| |||| | |
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| T |
37427749 |
gcaacattcccaatgccggaatatcagctaaacaatgtttcatttgtgcaagatccaggaaggcatatggaatctgttcatgttagaacaacatattaag |
37427848 |
T |
|
| Q |
199 |
aaattatccaagagatagagtaaatgaaatgaaccattagacaatttttcacta |
252 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
37427849 |
aaattatccaagagattgagtaaatgaaatgaacaattagacaatttttcacta |
37427902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 289 - 467
Target Start/End: Original strand, 37427906 - 37428084
Alignment:
| Q |
289 |
aaagtattttaatcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaatttagttatttactttgatacaacaat |
388 |
Q |
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||||| |||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37427906 |
aaagtgttttaaccaccagagaacaattattaaaaagtttccctagccttgtattttacttactaattacaaatttagttatttactttgatacaacaat |
37428005 |
T |
|
| Q |
389 |
gtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaagccgtaa |
467 |
Q |
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| T |
37428006 |
gtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatgcagataaagccgtaa |
37428084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 139
Target Start/End: Original strand, 51943479 - 51943591
Alignment:
| Q |
27 |
agtctccagacatgatgattttaaaagtaaacctaacaaaacttcacagttaacaaagagtagctgcaaatgacgcaacattccaaatgccggaatatca |
126 |
Q |
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|||| |||||| || ||||||||||||||| || ||||||| ||||| ||||| || ||||| || || || ||||||||||||||| |||||||| |
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| T |
51943479 |
agtcaccagacttggtgattttaaaagtaagcccaacaaaatttcacgagtaacagagtttagctccagatcactcaacattccaaatgcaggaatatcc |
51943578 |
T |
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| Q |
127 |
gctaaacaatgtt |
139 |
Q |
| |
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|||||| |||||| |
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| T |
51943579 |
gctaaataatgtt |
51943591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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