View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_40 (Length: 251)
Name: NF13139_low_40
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 14999668 - 14999445
Alignment:
| Q |
1 |
ccaagtattgtaaaaagaaaaagaagaggtttttcatgcccaccattgagcttacagtaaattgttacccgcatgtccaacctaaaaagtttgagcatca |
100 |
Q |
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| T |
14999668 |
ccaagtattgtaaaaagaaaaagaagaggtttttcatgcccaccattgagcttacagtaaattgttaccagcatgtccaacctaaaaagtttgagcatca |
14999569 |
T |
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| Q |
101 |
acctcattcaaaacttaaaaaactacattatttgttgcacagctgaatcacaaagtacatagnnnnnnnnggttctgattacatacatgtctttggcatg |
200 |
Q |
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| T |
14999568 |
acctcattcaaaac-taaaaaactacattatttgttgcacagctgaat---------catagttttttttggttctgat----tacatgtctttggcatg |
14999483 |
T |
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| Q |
201 |
agaatcacataattttcctctttttgtcattgtttttc |
238 |
Q |
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| T |
14999482 |
agaatcacataattttcctctttttgtcattgtttttc |
14999445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 29468464 - 29468372
Alignment:
| Q |
66 |
tacccgcatgtccaacctaaaaagttt--gagcatcaacctcattcaaaacttaaaaaactacattatttgttgcacagctgaatcacaaagta |
157 |
Q |
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| T |
29468464 |
taccggcatgtccaacctataaagtttttgagcatcaacctcgaccaaaact-aaaacactaccttatttctcgcacagctgaatcacaaagta |
29468372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 29468352 - 29468296
Alignment:
| Q |
184 |
tacatgtctttggcatgagaatcacataattttcctctttttgtcattgtttttcat |
240 |
Q |
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| T |
29468352 |
tacatgtcttcggcaagagaatcacacaattctcctctttttggcattgtttttcat |
29468296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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