View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_5 (Length: 595)
Name: NF13139_low_5
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 55696758 - 55697099
Alignment:
| Q |
8 |
tgagatgaaggaaaacgatccccagattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacg |
107 |
Q |
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||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696758 |
tgagatgaaggaagacgatcaccggattcatgggacttgtaaatgtggagacgggaacccaaaccacgaaagccttcaactggtaaatatttcacagacg |
55696857 |
T |
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| Q |
108 |
tccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696858 |
tccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttttttcaaacagactgttaaaatatgaaatgtaaaaact |
55696957 |
T |
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| Q |
208 |
gagcagcatctcttatcaaatcttgatatataaagttgttagaaaaacattgcagaacaaaatatctgagcacgcaataacaacctagattaagagatcc |
307 |
Q |
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| T |
55696958 |
gagcagcatctcttatcaaatcttgatatataaagttgttagaaaaacattgcagaacaaaatatctgaggacgcaataacaacctagattaagagatcc |
55697057 |
T |
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| Q |
308 |
tggataaattaaatatagcttgaggaagttgataatcaaatt |
349 |
Q |
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| T |
55697058 |
tggataaattaaatatagcttgaggaagttgataatcaaatt |
55697099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 55697407 - 55697453
Alignment:
| Q |
303 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
349 |
Q |
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| T |
55697407 |
gatcctggataaattaaatatagcttgaggaagttgataatcaaatt |
55697453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 351 - 578
Target Start/End: Original strand, 32012017 - 32012248
Alignment:
| Q |
351 |
aagaagttgaaggctttgcatgaggtgtacgagggaggatgcatgagtcatcgttcagacaggccctagatataagttgtctttattggctcaagcatgt |
450 |
Q |
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||||||||||||||||||||||||| | || ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32012017 |
aagaagttgaaggctttgcatgaggggaacaggggaggatgcatgagtcattgtttagacaggccctagatataagttgtctttattggctcaagcatgt |
32012116 |
T |
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| Q |
451 |
catc----acattattgaatatggtatattgtctgcatttgtcgagagatgacacgacaaggcttctagctttcatcttctgattgggaagatggcaatg |
546 |
Q |
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| T |
32012117 |
catttataacattattgaatatggtatattgtctgcatttgttgagagatgacacgacaaggcttctagctttcatcttctgattgggaagatggcaatg |
32012216 |
T |
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| Q |
547 |
acactacatgatgtttcatgtctgttgcatct |
578 |
Q |
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| T |
32012217 |
acactacatgatgtttcatgtctgttgcatct |
32012248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 61 - 172
Target Start/End: Original strand, 9235226 - 9235337
Alignment:
| Q |
61 |
ggaacccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatc |
160 |
Q |
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||||| ||| ||||| || |||||||||||||||| ||||||||| ||||||||||| |||||||| ||||||| || |||| ||||||||| || ||| |
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| T |
9235226 |
ggaactcaagccacggaaaccttcaactggtaaatgtttcacagatgtccaaaagaacagaagaactttcttttgctctgctgacattctcccgacgatc |
9235325 |
T |
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| Q |
161 |
tgccaagttttt |
172 |
Q |
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|||||||||||| |
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| T |
9235326 |
tgccaagttttt |
9235337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 9246830 - 9246920
Alignment:
| Q |
80 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgccaagttt |
170 |
Q |
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| T |
9246830 |
ccttcaactggtaaatgtttcacagatgtccagaagaacagaagaaccttcttttgctctgctggcattctcccaacgatctgccaagttt |
9246920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 66 - 173
Target Start/End: Original strand, 9254973 - 9255080
Alignment:
| Q |
66 |
ccaaaccacgaaagccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttcttttcttcagctgtcattctccccactatctgcca |
165 |
Q |
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| T |
9254973 |
ccaaaccatggaaacctttaactggtaaatgtttcacagatgtccaaaagaacagaagaaccttcctttgctctgctgacattcttccaacgatctgcca |
9255072 |
T |
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| Q |
166 |
agtttttt |
173 |
Q |
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|||||||| |
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| T |
9255073 |
agtttttt |
9255080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 9264993 - 9265047
Alignment:
| Q |
80 |
ccttcaactggtaaatatttcacagacgtccaaaagaaaagaagaaccttctttt |
134 |
Q |
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||||| |||||||||| |||||| || ||||||||||| |||||||||||||||| |
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| T |
9264993 |
ccttcgactggtaaatgtttcactgatgtccaaaagaacagaagaaccttctttt |
9265047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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