View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_6 (Length: 584)
Name: NF13139_low_6
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 132190 - 131673
Alignment:
| Q |
19 |
tcatcccagagaaatatataattgtagtcagcaactatgtctggatgcaaaaatcgttttgcaaaccacctatgtcatgatagagagaatttatttgttt |
118 |
Q |
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| T |
132190 |
tcatcccagagaaatatataattgtagtcagcaactatgtctggatgcaaaaatcgttttgcaaaccacctatgtcatgatagagagaatttatttgttt |
132091 |
T |
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| Q |
119 |
aatatttacagatataggagtagatgaccgcagagggaaaacaaattaacatatgagcttattataccatttcgtttgatttatagcagacacatgtatg |
218 |
Q |
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| T |
132090 |
aatatttacagatataggagtagatgaccgcagagggaaaacaaattaacatatgagcttattataccatttcgtttgatttatagcagacacatgtatg |
131991 |
T |
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| Q |
219 |
gcacgattactccaagctaaattcttccatccatccacaaagccatcataatgaaaaagcatcacaacaaaatcacttgacgggaactgccaccagcggt |
318 |
Q |
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| T |
131990 |
gcacgattactccaagctaaattcttccatccatccacaaagccatcataatgaaaaagcatcacaacaaaatcacttgacgggaactgccaccagcggt |
131891 |
T |
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| Q |
319 |
acaagtcagcagatatgagtttaaactgtagatcaaagtcaaattatataagtgaagcaaccgtcacctttttgacgattttatcaacaacttctttttg |
418 |
Q |
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| T |
131890 |
acaagtcagcagatatgagtttaaactgtagatcaaagtcaaattatataagtgaagcaaccgtcacctttttgacgattttatcaacaacttctttttg |
131791 |
T |
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| Q |
419 |
cttaactcctactgagatagccaacaaattcaatgggtggttcgaaattctctgaaccaggtagatgtcatcaattgaaaaaagaggaaattaatgcaca |
518 |
Q |
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| T |
131790 |
cttaactcctactgagatagccaacaaattcaatgggtggttcgaaattctctgaaccaggtagatgtcatcaattgaaaaaagaggaaattaatgcaca |
131691 |
T |
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| Q |
519 |
ttgcacaaatatagtagt |
536 |
Q |
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| T |
131690 |
ttgcacaaatatagtagt |
131673 |
T |
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