View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13139_low_9 (Length: 542)
Name: NF13139_low_9
Description: NF13139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13139_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 45150422 - 45150909
Alignment:
| Q |
6 |
agtgagatgaataagctgagatcctgggtccattagtgtagttgttactgtggttgtgatggccatgctagnnnnnnnnnnnnn----ggatagacggtg |
101 |
Q |
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| T |
45150422 |
agtgaaatgaataagctgagatcctgggtccattagtgtagttgttactgtggttgtgatggccatgctagtttttttttttttttttggatagacggtg |
45150521 |
T |
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| Q |
102 |
gccttgctagctgttgttgtagaggtgtcattagaattatttggatgttgttgtgtgttgtttatgaggataggataagttaacagcatcatatgtcaca |
201 |
Q |
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| T |
45150522 |
gccttgctagctgttgttgtagaggtttcatt--------ttggatgttgttgtgtgttgtttatgagggtaggacaagttaacagcatcatatgccaca |
45150613 |
T |
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| Q |
202 |
tgacattcctttccataaagtttctttcttgctgtagttcagcttcatcaaattggagccgtctatctgttctagagtacttatctgctgccctttgaat |
301 |
Q |
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| T |
45150614 |
tgacattcctttccataaagtttctttcttgctgtagttcagcttcatcaaattggagccgtctatctgttctagagtacttatctgctgccctttgaat |
45150713 |
T |
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| Q |
302 |
tgaaaagctcattcttttctggttaactgtatttttgtcctggcaatataccttttgtcattgcatcttcatttatccaaaaggaagttgacagggctgt |
401 |
Q |
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| T |
45150714 |
tgaaaagcttattcttttctggttaactgtatttttgtcctggcaatataccttttgtcattgcatcttcatttatccaaaaggaagttgacagggctgt |
45150813 |
T |
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| Q |
402 |
aatccattctgttatggtagttattgacctaaacaatcaggataggttatttcataatagttgttactgacttgaataacctaggttacgatgagg |
497 |
Q |
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| T |
45150814 |
aatccattctgttatggtagttattgacctaaacaatcaggataggttatttcataatagttgttactgacttgaataacctaggttacgttgagg |
45150909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 45303688 - 45303780
Alignment:
| Q |
178 |
aagttaacagcatcatatgtcacatgacattcctttccataaagtttctttcttgctgtagttcagcttcatcaaattggagccgtctatctg |
270 |
Q |
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| T |
45303688 |
aagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattggagccatccatctg |
45303780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 45303626 - 45303672
Alignment:
| Q |
30 |
tgggtccattagtgtagttgttactgtggttgtgatggccatgctag |
76 |
Q |
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| T |
45303626 |
tgggtccataagtctagttgttactgtggttgtggtggacatgctag |
45303672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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