View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_high_1 (Length: 648)
Name: NF1313_high_1
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 216 - 639
Target Start/End: Original strand, 30897591 - 30898013
Alignment:
| Q |
216 |
ggatgagcgtatattatttgacatcaaaataccatttatcaannnnnnnacataaattaattatgaattttgtaatatgttcaagaacttaaattnnnnn |
315 |
Q |
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| T |
30897591 |
ggatgagcgtatattatttgacatcaaaataccatttatcaaaatttttacataaattaattatgaattttgtaatatattcaagaacttaaattaaaaa |
30897690 |
T |
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| Q |
316 |
nnttacttagaatgtacatcatatactcctaataaattaaattgaaaacagctagttgaaaatgtttatttannnnnnngttgagaggagctagttgaaa |
415 |
Q |
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| T |
30897691 |
aattacttagaatgtacatcata--ctcctactaaattaaaatgaaaacagctagttgaaaatgtttatttatttttttgttgagaggagctagttgaaa |
30897788 |
T |
|
| Q |
416 |
atgttgaaccgtgtggtattaattatactaattattagtatatatcgtcatgtttggttgggttgtcttccacaattcaagaccttaagaaagccagacc |
515 |
Q |
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| T |
30897789 |
atgttgaaccgtgtggtattaattatactaattattagtatatatcgtcatgtttggttgggttgtcttccacaattcaagacgttaagaaagccagacc |
30897888 |
T |
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| Q |
516 |
tttattttatcgttttgttattattccaccaccctctaaattctga-tttatcatttggtttgttttgtctagattcgtgcaattcattgnnnnnnnaat |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30897889 |
tttattttatcgttttgttattattccaccaccctctaaattctgattttatcatttggtttgttttgtctagattcgtgcaattcattgtttttttaat |
30897988 |
T |
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| Q |
615 |
tcacaagatttatttgaagtataat |
639 |
Q |
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| T |
30897989 |
tcacaagatttatttgaagtataat |
30898013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 30897428 - 30897465
Alignment:
| Q |
99 |
atttatacctccatgattaagagaaatatgagttgctt |
136 |
Q |
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||||||| || ||||||||||||||||||||||||||| |
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| T |
30897428 |
atttataactacatgattaagagaaatatgagttgctt |
30897465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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