View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1313_high_12 (Length: 273)
Name: NF1313_high_12
Description: NF1313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1313_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 121 - 273
Target Start/End: Complemental strand, 21269079 - 21268927
Alignment:
| Q |
121 |
ttatccttcttgggaagtggtgacatgagttcaactttcttcttaatcttctcagcaagattgtctctcagttttgtggggtccacatttccggtgacgg |
220 |
Q |
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| T |
21269079 |
ttatccttcttgggaattggtgaaatgagttcaactttcttcttaatcttctcagcaagattgtctctcagttttgtggggtccacatttccggtgacgg |
21268980 |
T |
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| Q |
221 |
ttacttttccggtttcactctctgctttcaccgtatcaacaccttaaaaacag |
273 |
Q |
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| T |
21268979 |
ttacttttccggtttcactctctgctttcaccgtatcaacaccttaaaaacag |
21268927 |
T |
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